Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS07820

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
1,787,149	+		HSERO_RS07810	0.70	-0.4
1,787,157	-		HSERO_RS07810	0.71	-0.5
1,787,157	-		HSERO_RS07810	0.71	+1.0
1,787,157	-		HSERO_RS07810	0.71	-0.3
1,787,198	-		HSERO_RS07810	0.73	-0.5
1,787,216	-		HSERO_RS07810	0.75	-0.6
1,787,608	+				-0.6
1,787,669	+				-0.2
1,787,669	+				+0.5
1,788,095	-		HSERO_RS07820	0.28	-0.9
1,788,148	+		HSERO_RS07820	0.41	+1.0
1,788,178	+		HSERO_RS07820	0.48	+1.3
1,788,186	-		HSERO_RS07820	0.50	-0.1
1,788,203	+		HSERO_RS07820	0.54	-0.2
1,788,254	+		HSERO_RS07820	0.67	+0.7
1,788,373	-				-0.3
1,788,553	-				+1.0
1,788,560	-				+0.4
1,788,560	-				+0.8
1,788,565	-				-1.2
1,788,954	-				+0.2
1,789,051	+				+0.6
1,789,059	-				-0.9
1,789,110	-				+0.3
1,789,164	+				+0.8
1,789,195	+				-3.0
1,789,281	-				+0.8