Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS07175

Experiment: C.elegans, mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS07170 and HSERO_RS07175 are separated by 78 nucleotidesHSERO_RS07175 and HSERO_RS07180 are separated by 37 nucleotides HSERO_RS07170: HSERO_RS07170 - UDP-N-acetylenolpyruvoylglucosamine reductase, at 1,638,650 to 1,639,681 _RS07170 HSERO_RS07175: HSERO_RS07175 - hypothetical protein, at 1,639,760 to 1,640,074 _RS07175 HSERO_RS07180: HSERO_RS07180 - argininosuccinate synthase, at 1,640,112 to 1,641,446 _RS07180 Position (kb) 1639 1640 1641Strain fitness (log2 ratio) -1 0 1at 1640.000 kb on + strand, within HSERO_RS07175at 1640.008 kb on - strand, within HSERO_RS07175

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1
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1,640,000 + HSERO_RS07175 0.76 -0.6
1,640,008 - HSERO_RS07175 0.79 -1.4

Or see this region's nucleotide sequence