Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS07160

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
1,635,981	+		HSERO_RS07155	0.76	+1.3
1,635,989	-		HSERO_RS07155	0.77	+0.3
1,635,989	-		HSERO_RS07155	0.77	-1.9
1,636,155	+		HSERO_RS07155	0.88	-1.6
1,636,421	+				-0.8
1,636,501	+				+0.0
1,636,508	-				-0.5
1,636,613	-				-0.5
1,636,613	-				+0.6
1,636,613	-				+0.8
1,636,613	-				-0.2
1,636,669	-				+1.9
1,636,705	-				+0.1
1,636,762	-				-0.2
1,636,773	-				-1.5
1,636,838	+				-1.2
1,636,937	-				-3.0
1,637,308	+		HSERO_RS07160	0.40	+0.9
1,637,370	+		HSERO_RS07160	0.46	-2.8
1,637,413	-				-0.8
1,637,413	-		HSERO_RS07160	0.50	-0.4
1,637,616	-		HSERO_RS07160	0.69	-1.5
1,638,135	+		HSERO_RS07165	0.22	+0.5
1,638,248	-		HSERO_RS07165	0.45	-1.4
1,638,293	+		HSERO_RS07165	0.54	-0.1
1,638,430	-		HSERO_RS07165	0.83	-0.3
1,638,450	+		HSERO_RS07165	0.87	-0.8
1,638,486	+				-0.6
1,638,515	+				-0.6