Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS07140

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
1,625,852	+				+0.4
1,625,897	-		HSERO_RS07135	0.16	+0.2
1,625,946	-		HSERO_RS07135	0.22	-0.2
1,626,406	+		HSERO_RS07135	0.87	-0.1
1,626,496	-				-0.2
1,626,584	-				-0.0
1,626,611	-				+0.4
1,626,677	+				+1.4
1,626,784	+				+1.9
1,627,742	-		HSERO_RS07140	0.41	-0.2
1,627,780	+		HSERO_RS07140	0.42	+0.2
1,627,824	+		HSERO_RS07140	0.44	-0.4
1,627,987	-		HSERO_RS07140	0.50	-1.4
1,628,326	-		HSERO_RS07140	0.62	-1.1
1,628,331	+		HSERO_RS07140	0.62	-1.9
1,628,588	-		HSERO_RS07140	0.71	+0.3
1,628,590	-		HSERO_RS07140	0.71	+0.6
1,628,914	+				+0.9
1,629,303	-				+1.1
1,629,333	-				+0.1
1,629,423	+				-0.3
1,629,431	-				-0.6
1,629,431	-				+0.4
1,629,433	+				-0.8
1,629,519	+				+0.4
1,629,519	+				+2.6
1,629,665	-				-0.3
1,629,676	+				-0.3
1,629,804	+				-0.4
1,629,924	+				-0.9
1,630,016	-				+0.3
1,630,157	+		HSERO_RS07145	0.12	-0.9
1,630,242	+		HSERO_RS07145	0.14	-0.2