Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS06860

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
1,561,200	-		HSERO_RS06855	0.71	-0.6
1,561,231	+		HSERO_RS06855	0.72	+0.9
1,561,313	+		HSERO_RS06855	0.75	-1.0
1,561,313	+		HSERO_RS06855	0.75	+0.4
1,561,454	+		HSERO_RS06855	0.81	+0.2
1,561,699	-				-0.1
1,562,359	-		HSERO_RS06860	0.38	-1.5
1,562,382	-		HSERO_RS06860	0.41	-1.1
1,562,443	+		HSERO_RS06860	0.49	-0.5
1,562,607	+		HSERO_RS06860	0.69	-1.5
1,562,675	+		HSERO_RS06860	0.78	-2.0
1,562,683	-		HSERO_RS06860	0.79	-1.5
1,562,885	+				+1.4
1,562,935	+				-0.7
1,562,935	+				+0.4
1,562,943	-				+0.4
1,562,943	-				+0.4
1,562,971	+				-1.2
1,562,977	-				+0.5
1,562,979	-				+0.9
1,563,048	-				-0.5
1,563,048	-				-0.2
1,563,048	-				+0.1
1,563,050	-				+0.1
1,563,082	-				-0.3
1,563,084	+				+0.2
1,563,085	+				-0.8
1,563,086	+				+0.3
1,563,102	+				-0.0
1,563,110	-				+0.1
1,563,110	-				-0.4
1,563,241	-				+0.8
1,563,243	+				+0.4
1,563,251	-				-0.4
1,563,259	-				-0.4
1,563,343	-				-2.5
1,563,373	-				+0.5
1,563,401	+		HSERO_RS06865	0.11	-0.0
1,563,403	+		HSERO_RS06865	0.12	+0.3
1,563,403	+		HSERO_RS06865	0.12	-0.1
1,563,428	+		HSERO_RS06865	0.15	+0.1
1,563,462	+		HSERO_RS06865	0.20	-0.2
1,563,531	-		HSERO_RS06865	0.31	-0.4
1,563,553	-		HSERO_RS06865	0.34	+0.0
1,563,578	+		HSERO_RS06865	0.38	+0.6
1,563,605	+		HSERO_RS06865	0.42	+0.4
1,563,712	+		HSERO_RS06865	0.57	-0.9
1,563,790	-		HSERO_RS06865	0.69	-1.4