Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS06730

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
1,529,275	-		HSERO_RS06725	0.29	+1.6
1,529,522	-		HSERO_RS06725	0.51	-0.0
1,529,596	-		HSERO_RS06725	0.58	-0.3
1,529,609	+		HSERO_RS06725	0.59	-0.3
1,529,609	+		HSERO_RS06725	0.59	+2.9
1,529,628	+		HSERO_RS06725	0.61	+3.5
1,529,661	-		HSERO_RS06725	0.64	-0.7
1,529,871	-		HSERO_RS06725	0.82	+0.6
1,529,871	-		HSERO_RS06725	0.82	-0.4
1,530,010	+				-1.3
1,530,088	-				+0.3
1,530,099	-				+0.1
1,530,208	+		HSERO_RS06730	0.36	-1.2
1,530,208	+		HSERO_RS06730	0.36	-1.5
1,530,216	-		HSERO_RS06730	0.39	-0.4
1,530,427	-				-0.3
1,530,576	-		HSERO_RS06735	0.13	+0.2
1,530,707	+		HSERO_RS06735	0.27	+1.0
1,530,707	+		HSERO_RS06735	0.27	-0.1
1,530,715	-		HSERO_RS06735	0.28	+0.1
1,530,715	-				+0.6
1,530,715	-		HSERO_RS06735	0.28	-0.6
1,530,740	-		HSERO_RS06735	0.31	-0.0
1,530,879	-		HSERO_RS06735	0.46	+0.5
1,531,062	+		HSERO_RS06735	0.65	-0.2