Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS05890

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
1,339,003	+		HSERO_RS05885	0.68	+1.9
1,339,052	+		HSERO_RS05885	0.70	-0.5
1,339,092	+		HSERO_RS05885	0.72	-0.6
1,339,110	-		HSERO_RS05885	0.73	-1.1
1,339,355	-		HSERO_RS05885	0.85	-2.1
1,339,377	+		HSERO_RS05885	0.86	+1.9
1,339,390	-		HSERO_RS05885	0.87	-0.4
1,339,465	-				-0.2
1,339,616	+				+0.9
1,339,684	-				-0.6
1,339,923	+				+0.7
1,340,108	-		HSERO_RS05890	0.30	-1.7
1,340,190	-		HSERO_RS05890	0.40	-0.2
1,340,607	+				-0.8
1,340,694	+				+0.8
1,340,694	+				+0.0
1,340,702	-				+1.8
1,340,740	-				-1.5
1,340,888	-		HSERO_RS05895	0.15	-0.6
1,341,077	-		HSERO_RS05895	0.31	-0.3
1,341,179	+		HSERO_RS05895	0.39	-0.3
1,341,213	-		HSERO_RS05895	0.42	-0.1
1,341,417	-		HSERO_RS05895	0.59	+1.1
1,341,496	-		HSERO_RS05895	0.66	+0.1
1,341,556	-		HSERO_RS05895	0.71	+0.0
1,341,582	+		HSERO_RS05895	0.73	+0.3
1,341,583	+		HSERO_RS05895	0.73	+0.8
1,341,583	+		HSERO_RS05895	0.73	-0.9
1,341,597	-		HSERO_RS05895	0.74	-0.2