Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS05835

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
1,327,555	+		HSERO_RS05825	0.67	+0.1
1,327,579	-		HSERO_RS05825	0.70	-0.9
1,327,753	-				-0.5
1,327,801	-				+0.4
1,327,946	-				-0.6
1,327,984	-		HSERO_RS05830	0.13	-0.1
1,328,019	+		HSERO_RS05830	0.18	+0.5
1,328,034	+		HSERO_RS05830	0.20	-0.2
1,328,096	-		HSERO_RS05830	0.30	-0.3
1,328,270	-		HSERO_RS05830	0.56	+0.1
1,328,455	+		HSERO_RS05830	0.84	+1.1
1,328,455	+		HSERO_RS05830	0.84	-0.3
1,328,481	-		HSERO_RS05830	0.88	+1.3
1,328,679	+		HSERO_RS05835	0.17	-1.3
1,328,796	+				-0.9
1,328,806	+		HSERO_RS05835	0.35	-0.4
1,328,832	+		HSERO_RS05835	0.38	-0.8
1,328,835	-		HSERO_RS05835	0.39	-1.2
1,328,840	-		HSERO_RS05835	0.39	+0.2
1,328,840	-		HSERO_RS05835	0.39	+0.1
1,328,840	-		HSERO_RS05835	0.39	+0.1
1,328,858	+		HSERO_RS05835	0.42	+0.0
1,329,221	-				+0.2
1,329,299	+				+0.5
1,329,439	+		HSERO_RS05840	0.11	-1.4
1,329,439	+		HSERO_RS05840	0.11	-0.7
1,329,447	-		HSERO_RS05840	0.11	+2.2
1,329,447	-		HSERO_RS05840	0.11	-0.2
1,329,451	+		HSERO_RS05840	0.12	+1.3
1,329,497	+		HSERO_RS05840	0.15	-1.6
1,329,569	-		HSERO_RS05840	0.21	-0.0
1,329,571	+		HSERO_RS05840	0.21	+0.4
1,329,573	+		HSERO_RS05840	0.21	-0.0
1,329,595	+		HSERO_RS05840	0.23	+0.2
1,329,722	+		HSERO_RS05840	0.33	+0.8
1,329,897	+		HSERO_RS05840	0.46	+0.4
1,329,905	-		HSERO_RS05840	0.47	-0.4
1,330,275	-		HSERO_RS05840	0.75	-0.9