Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS05340

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
1,179,750	-		HSERO_RS05335	0.43	+1.9
1,179,750	-		HSERO_RS05335	0.43	+0.9
1,179,800	-		HSERO_RS05335	0.46	-0.6
1,179,883	-		HSERO_RS05335	0.51	+1.7
1,180,060	-		HSERO_RS05335	0.61	+1.1
1,180,060	-		HSERO_RS05335	0.61	+0.0
1,180,065	-		HSERO_RS05335	0.62	-0.2
1,180,101	+		HSERO_RS05335	0.64	-1.5
1,180,137	-		HSERO_RS05335	0.66	-0.4
1,180,471	+		HSERO_RS05335	0.86	+0.8
1,180,509	+		HSERO_RS05335	0.89	+2.5
1,180,519	+		HSERO_RS05335	0.89	-0.5
1,180,532	-				-0.3
1,180,804	-		HSERO_RS05340	0.13	+0.5
1,181,079	-		HSERO_RS05340	0.51	-0.6
1,181,233	-		HSERO_RS05340	0.72	-0.0
1,181,259	+		HSERO_RS05340	0.75	-1.8
1,181,262	-		HSERO_RS05340	0.76	-1.7
1,181,375	-				+0.1
1,181,817	+				-0.2
1,181,970	-				+0.5
1,181,992	+				-1.0
1,182,033	-				-0.9
1,182,083	+				+0.4
1,182,123	+				-0.3
1,182,207	+		HSERO_RS05350	0.16	-2.3
1,182,207	+		HSERO_RS05350	0.16	-2.0
1,182,381	+		HSERO_RS05350	0.33	-0.2
1,182,388	+		HSERO_RS05350	0.33	+0.1
1,182,429	-		HSERO_RS05350	0.37	-1.0