Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS05125

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
1,132,717	+		HSERO_RS05120	0.38	+0.4
1,132,725	-		HSERO_RS05120	0.39	+0.3
1,132,767	+		HSERO_RS05120	0.43	-0.1
1,132,879	-		HSERO_RS05120	0.54	-0.4
1,132,999	+				+1.1
1,133,114	-		HSERO_RS05120	0.76	-0.2
1,133,287	+				-0.5
1,133,316	-				+0.9
1,133,338	-				-0.5
1,133,352	+				+0.1
1,133,398	+				+0.0
1,133,443	+				+0.4
1,133,443	+				+0.1
1,133,734	-		HSERO_RS05125	0.14	+0.0
1,133,846	+		HSERO_RS05125	0.28	-0.3
1,133,854	-		HSERO_RS05125	0.29	-1.1
1,133,894	+		HSERO_RS05125	0.34	-0.1
1,133,894	+		HSERO_RS05125	0.34	-0.8
1,133,978	-		HSERO_RS05125	0.44	-1.9
1,134,308	-		HSERO_RS05125	0.84	+1.0
1,134,817	+		HSERO_RS05130	0.45	+2.1
1,134,988	+		HSERO_RS05130	0.66	+0.9
1,135,059	-		HSERO_RS05130	0.75	-0.4
1,135,116	-		HSERO_RS05130	0.82	-0.7
1,135,161	-		HSERO_RS05130	0.88	-0.1
1,135,161	-		HSERO_RS05130	0.88	+0.3
1,135,363	-				+0.1