Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS04315 and HSERO_RS04320 are separated by 131 nucleotides HSERO_RS04320 and HSERO_RS04325 are separated by 446 nucleotides HSERO_RS04325 and HSERO_RS04330 overlap by 25 nucleotides
HSERO_RS04315: HSERO_RS04315 - transcription termination factor Rho, at 949,021 to 950,283
_RS04315
HSERO_RS04320: HSERO_RS04320 - thioredoxin, at 950,415 to 950,741
_RS04320
HSERO_RS04325: HSERO_RS04325 - helicase I, at 951,188 to 953,962
_RS04325
HSERO_RS04330: HSERO_RS04330 - ATP-dependent exonuclease, at 953,938 to 957,435
_RS04330
Position (kb) 951
952
953
954 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 950.915 kb on + strand at 951.084 kb on - strand at 951.103 kb on - strand at 951.379 kb on - strand at 951.488 kb on + strand, within HSERO_RS04325 at 951.560 kb on + strand, within HSERO_RS04325 at 951.849 kb on - strand, within HSERO_RS04325 at 951.932 kb on + strand, within HSERO_RS04325 at 951.940 kb on - strand at 952.093 kb on - strand, within HSERO_RS04325 at 952.637 kb on + strand, within HSERO_RS04325 at 952.683 kb on + strand, within HSERO_RS04325 at 952.729 kb on - strand, within HSERO_RS04325 at 952.766 kb on + strand, within HSERO_RS04325 at 952.837 kb on - strand, within HSERO_RS04325 at 952.911 kb on + strand, within HSERO_RS04325 at 952.980 kb on - strand, within HSERO_RS04325 at 953.221 kb on - strand, within HSERO_RS04325 at 953.941 kb on + strand at 954.317 kb on + strand, within HSERO_RS04330 at 954.346 kb on - strand, within HSERO_RS04330 at 954.885 kb on - strand, within HSERO_RS04330 at 954.947 kb on + strand, within HSERO_RS04330
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 950,915 + +0.0 951,084 - -0.5 951,103 - -1.3 951,379 - +0.5 951,488 + HSERO_RS04325 0.11 +0.5 951,560 + HSERO_RS04325 0.13 +1.8 951,849 - HSERO_RS04325 0.24 -0.2 951,932 + HSERO_RS04325 0.27 +0.8 951,940 - +0.8 952,093 - HSERO_RS04325 0.33 -1.9 952,637 + HSERO_RS04325 0.52 +1.2 952,683 + HSERO_RS04325 0.54 -1.0 952,729 - HSERO_RS04325 0.56 -1.2 952,766 + HSERO_RS04325 0.57 +1.8 952,837 - HSERO_RS04325 0.59 -0.6 952,911 + HSERO_RS04325 0.62 -1.8 952,980 - HSERO_RS04325 0.65 +0.5 953,221 - HSERO_RS04325 0.73 +1.2 953,941 + -0.0 954,317 + HSERO_RS04330 0.11 +2.8 954,346 - HSERO_RS04330 0.12 -0.6 954,885 - HSERO_RS04330 0.27 +0.8 954,947 + HSERO_RS04330 0.29 -1.7
Or see this region's nucleotide sequence