Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS04220 and HSERO_RS04225 are separated by 12 nucleotides HSERO_RS04225 and HSERO_RS04230 are separated by 15 nucleotides HSERO_RS04230 and HSERO_RS04235 are separated by 53 nucleotides
HSERO_RS04220: HSERO_RS04220 - epoxyqueuosine reductase, at 926,945 to 928,090
_RS04220
HSERO_RS04225: HSERO_RS04225 - permease, at 928,103 to 928,993
_RS04225
HSERO_RS04230: HSERO_RS04230 - LuxR family transcriptional regulator, at 929,009 to 929,599
_RS04230
HSERO_RS04235: HSERO_RS04235 - C4-dicarboxylate ABC transporter, at 929,653 to 931,677
_RS04235
Position (kb) 929
930 Strain fitness (log2 ratio) -1
0
1
2 at 928.032 kb on + strand at 928.119 kb on + strand at 928.191 kb on - strand at 928.444 kb on + strand, within HSERO_RS04225 at 928.489 kb on + strand, within HSERO_RS04225 at 928.666 kb on - strand, within HSERO_RS04225 at 928.720 kb on - strand, within HSERO_RS04225 at 928.733 kb on - strand, within HSERO_RS04225 at 928.801 kb on - strand, within HSERO_RS04225 at 928.835 kb on - strand, within HSERO_RS04225 at 928.918 kb on + strand at 928.937 kb on - strand at 929.192 kb on + strand, within HSERO_RS04230 at 929.207 kb on - strand, within HSERO_RS04230 at 929.330 kb on - strand, within HSERO_RS04230 at 929.596 kb on + strand at 929.725 kb on - strand at 930.008 kb on - strand at 930.090 kb on + strand, within HSERO_RS04235 at 930.188 kb on + strand, within HSERO_RS04235 at 930.278 kb on - strand, within HSERO_RS04235 at 930.281 kb on - strand, within HSERO_RS04235 at 930.510 kb on - strand at 930.538 kb on - strand, within HSERO_RS04235 at 930.564 kb on - strand, within HSERO_RS04235 at 930.574 kb on - strand, within HSERO_RS04235
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 928,032 + +0.8 928,119 + +0.2 928,191 - +0.6 928,444 + HSERO_RS04225 0.38 -0.0 928,489 + HSERO_RS04225 0.43 -0.7 928,666 - HSERO_RS04225 0.63 +0.9 928,720 - HSERO_RS04225 0.69 +0.8 928,733 - HSERO_RS04225 0.71 +1.1 928,801 - HSERO_RS04225 0.78 -0.3 928,835 - HSERO_RS04225 0.82 +1.0 928,918 + +0.2 928,937 - +0.7 929,192 + HSERO_RS04230 0.31 -1.0 929,207 - HSERO_RS04230 0.34 +2.5 929,330 - HSERO_RS04230 0.54 -1.7 929,596 + -0.7 929,725 - -0.4 930,008 - +0.4 930,090 + HSERO_RS04235 0.22 +1.0 930,188 + HSERO_RS04235 0.26 -1.0 930,278 - HSERO_RS04235 0.31 +0.2 930,281 - HSERO_RS04235 0.31 -0.6 930,510 - +0.8 930,538 - HSERO_RS04235 0.44 -0.7 930,564 - HSERO_RS04235 0.45 -0.8 930,574 - HSERO_RS04235 0.45 -0.3
Or see this region's nucleotide sequence