Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03770 and HSERO_RS03775 are separated by 145 nucleotides HSERO_RS03775 and HSERO_RS03780 are separated by 27 nucleotides HSERO_RS03780 and HSERO_RS03785 overlap by 4 nucleotides
HSERO_RS03770: HSERO_RS03770 - type VI secretion protein, at 830,344 to 831,471
_RS03770
HSERO_RS03775: HSERO_RS03775 - cell envelope biogenesis protein OmpA, at 831,617 to 832,408
_RS03775
HSERO_RS03780: HSERO_RS03780 - type VI secretion protein, at 832,436 to 833,422
_RS03780
HSERO_RS03785: HSERO_RS03785 - type VI secretion protein VasK, at 833,419 to 837,294
_RS03785
Position (kb) 832
833
834 Strain fitness (log2 ratio) -2
-1
0
1
2 at 831.534 kb on + strand at 831.563 kb on - strand at 831.599 kb on + strand at 831.609 kb on + strand at 831.609 kb on + strand at 831.669 kb on - strand at 831.703 kb on + strand, within HSERO_RS03775 at 831.703 kb on + strand, within HSERO_RS03775 at 831.722 kb on + strand, within HSERO_RS03775 at 831.760 kb on - strand, within HSERO_RS03775 at 831.914 kb on - strand, within HSERO_RS03775 at 831.916 kb on + strand, within HSERO_RS03775 at 831.970 kb on + strand, within HSERO_RS03775 at 831.978 kb on - strand, within HSERO_RS03775 at 832.234 kb on - strand, within HSERO_RS03775 at 832.365 kb on + strand at 832.378 kb on - strand at 832.378 kb on - strand at 832.416 kb on - strand at 832.441 kb on - strand at 832.445 kb on + strand at 832.517 kb on + strand at 832.598 kb on - strand, within HSERO_RS03780 at 832.598 kb on - strand, within HSERO_RS03780 at 832.659 kb on - strand at 832.717 kb on + strand, within HSERO_RS03780 at 832.854 kb on - strand, within HSERO_RS03780 at 833.663 kb on - strand at 833.690 kb on + strand at 833.723 kb on + strand at 833.792 kb on - strand at 833.806 kb on + strand at 833.903 kb on - strand, within HSERO_RS03785 at 833.923 kb on + strand, within HSERO_RS03785 at 833.931 kb on - strand, within HSERO_RS03785 at 834.057 kb on + strand at 834.065 kb on - strand, within HSERO_RS03785 at 834.303 kb on + strand, within HSERO_RS03785
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 831,534 + -0.5 831,563 - +0.6 831,599 + +0.3 831,609 + +1.1 831,609 + +0.9 831,669 - -0.4 831,703 + HSERO_RS03775 0.11 -2.0 831,703 + HSERO_RS03775 0.11 -0.2 831,722 + HSERO_RS03775 0.13 -0.6 831,760 - HSERO_RS03775 0.18 +0.2 831,914 - HSERO_RS03775 0.38 -0.7 831,916 + HSERO_RS03775 0.38 +0.7 831,970 + HSERO_RS03775 0.45 -1.0 831,978 - HSERO_RS03775 0.46 +0.3 832,234 - HSERO_RS03775 0.78 -0.4 832,365 + -0.2 832,378 - -0.2 832,378 - -0.7 832,416 - -0.4 832,441 - -0.5 832,445 + -0.4 832,517 + -0.9 832,598 - HSERO_RS03780 0.16 -0.7 832,598 - HSERO_RS03780 0.16 -2.0 832,659 - +0.5 832,717 + HSERO_RS03780 0.28 -0.5 832,854 - HSERO_RS03780 0.42 -1.2 833,663 - -0.1 833,690 + +1.5 833,723 + +0.4 833,792 - +1.8 833,806 + -0.6 833,903 - HSERO_RS03785 0.12 -0.4 833,923 + HSERO_RS03785 0.13 -1.0 833,931 - HSERO_RS03785 0.13 -0.7 834,057 + +0.5 834,065 - HSERO_RS03785 0.17 +0.5 834,303 + HSERO_RS03785 0.23 +0.1
Or see this region's nucleotide sequence