Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03440 and HSERO_RS03445 overlap by 1 nucleotides HSERO_RS03445 and HSERO_RS03450 are separated by 53 nucleotides HSERO_RS03450 and HSERO_RS03455 are separated by 9 nucleotides HSERO_RS03455 and HSERO_RS03460 are separated by 30 nucleotides HSERO_RS03460 and HSERO_RS03465 are separated by 93 nucleotides
HSERO_RS03440: HSERO_RS03440 - biopolymer transporter ExbD, at 752,891 to 753,307
_RS03440
HSERO_RS03445: HSERO_RS03445 - biopolymer transport transmembrane protein, at 753,307 to 754,038
_RS03445
HSERO_RS03450: HSERO_RS03450 - energy transducer protein TonB, at 754,092 to 754,790
_RS03450
HSERO_RS03455: HSERO_RS03455 - regulatory or redox protein complexing with Bfr, in iron storage and mobility, at 754,800 to 755,027
_RS03455
HSERO_RS03460: HSERO_RS03460 - hypothetical protein, at 755,058 to 755,381
_RS03460
HSERO_RS03465: HSERO_RS03465 - hemin transporter, at 755,475 to 755,663
_RS03465
Position (kb) 754
755 Strain fitness (log2 ratio) -2
-1
0
1 at 753.123 kb on - strand, within HSERO_RS03440 at 753.164 kb on - strand, within HSERO_RS03440 at 753.238 kb on - strand, within HSERO_RS03440 at 753.260 kb on - strand, within HSERO_RS03440 at 753.499 kb on - strand, within HSERO_RS03445 at 753.595 kb on + strand, within HSERO_RS03445 at 753.627 kb on - strand, within HSERO_RS03445 at 753.822 kb on + strand, within HSERO_RS03445 at 753.830 kb on - strand, within HSERO_RS03445 at 754.002 kb on + strand at 754.384 kb on - strand, within HSERO_RS03450 at 754.502 kb on + strand, within HSERO_RS03450 at 754.722 kb on + strand at 754.776 kb on - strand at 755.139 kb on + strand, within HSERO_RS03460 at 755.147 kb on + strand, within HSERO_RS03460 at 755.243 kb on - strand, within HSERO_RS03460 at 755.250 kb on + strand, within HSERO_RS03460 at 755.258 kb on - strand, within HSERO_RS03460 at 755.346 kb on - strand, within HSERO_RS03460 at 755.393 kb on + strand at 755.401 kb on - strand at 755.435 kb on + strand at 755.473 kb on + strand at 755.565 kb on + strand, within HSERO_RS03465 at 755.633 kb on + strand, within HSERO_RS03465
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 753,123 - HSERO_RS03440 0.56 +1.2 753,164 - HSERO_RS03440 0.65 -1.8 753,238 - HSERO_RS03440 0.83 +0.8 753,260 - HSERO_RS03440 0.88 -0.7 753,499 - HSERO_RS03445 0.26 +0.0 753,595 + HSERO_RS03445 0.39 -0.7 753,627 - HSERO_RS03445 0.44 -0.9 753,822 + HSERO_RS03445 0.70 +0.2 753,830 - HSERO_RS03445 0.71 -0.3 754,002 + -1.1 754,384 - HSERO_RS03450 0.42 -0.2 754,502 + HSERO_RS03450 0.59 -2.3 754,722 + -1.6 754,776 - +0.1 755,139 + HSERO_RS03460 0.25 +0.5 755,147 + HSERO_RS03460 0.27 +0.7 755,243 - HSERO_RS03460 0.57 -0.8 755,250 + HSERO_RS03460 0.59 -0.5 755,258 - HSERO_RS03460 0.62 -1.5 755,346 - HSERO_RS03460 0.89 -0.9 755,393 + +0.1 755,401 - +0.3 755,435 + +0.3 755,473 + +0.9 755,565 + HSERO_RS03465 0.48 -1.0 755,633 + HSERO_RS03465 0.84 +0.4
Or see this region's nucleotide sequence