Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS03350

Experiment: C.elegans, mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS03345 and HSERO_RS03350 are separated by 227 nucleotidesHSERO_RS03350 and HSERO_RS03355 are separated by 26 nucleotides HSERO_RS03345: HSERO_RS03345 - phosphoglycerate kinase, at 733,179 to 734,369 _RS03345 HSERO_RS03350: HSERO_RS03350 - hypothetical protein, at 734,597 to 736,030 _RS03350 HSERO_RS03355: HSERO_RS03355 - fructose-bisphosphate aldolase, at 736,057 to 737,121 _RS03355 Position (kb) 734 735 736 737Strain fitness (log2 ratio) -2 -1 0 1 2at 734.553 kb on + strandat 734.851 kb on + strand, within HSERO_RS03350at 734.984 kb on + strand, within HSERO_RS03350at 735.100 kb on + strand, within HSERO_RS03350at 735.142 kb on + strand, within HSERO_RS03350at 735.318 kb on + strand, within HSERO_RS03350at 735.448 kb on + strand, within HSERO_RS03350at 735.457 kb on + strand, within HSERO_RS03350at 735.457 kb on + strand, within HSERO_RS03350at 735.636 kb on - strand, within HSERO_RS03350at 735.960 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1
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734,553 + +1.4
734,851 + HSERO_RS03350 0.18 -1.2
734,984 + HSERO_RS03350 0.27 -0.9
735,100 + HSERO_RS03350 0.35 -0.8
735,142 + HSERO_RS03350 0.38 -0.3
735,318 + HSERO_RS03350 0.50 -2.2
735,448 + HSERO_RS03350 0.59 -0.7
735,457 + HSERO_RS03350 0.60 +1.8
735,457 + HSERO_RS03350 0.60 -0.2
735,636 - HSERO_RS03350 0.72 -0.4
735,960 + -1.4

Or see this region's nucleotide sequence