Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03255 and HSERO_RS03260 are separated by 355 nucleotides HSERO_RS03260 and HSERO_RS03265 are separated by 2 nucleotides
HSERO_RS03255: HSERO_RS03255 - sulfonate ABC transporter substrate-binding protein, at 715,975 to 716,961
_RS03255
HSERO_RS03260: HSERO_RS03260 - histidine kinase, at 717,317 to 717,925
_RS03260
HSERO_RS03265: HSERO_RS03265 - transcription regulator protein, at 717,928 to 719,556
_RS03265
Position (kb) 717
718 Strain fitness (log2 ratio) -2
-1
0
1 at 716.637 kb on - strand at 716.639 kb on + strand, within HSERO_RS03255 at 716.682 kb on + strand, within HSERO_RS03255 at 716.722 kb on - strand, within HSERO_RS03255 at 716.825 kb on - strand, within HSERO_RS03255 at 716.825 kb on - strand, within HSERO_RS03255 at 716.825 kb on - strand, within HSERO_RS03255 at 716.995 kb on - strand at 717.011 kb on + strand at 717.026 kb on - strand at 717.267 kb on + strand at 717.267 kb on + strand at 717.280 kb on - strand at 717.535 kb on - strand, within HSERO_RS03260 at 718.098 kb on - strand, within HSERO_RS03265 at 718.183 kb on + strand, within HSERO_RS03265 at 718.222 kb on + strand, within HSERO_RS03265 at 718.230 kb on - strand, within HSERO_RS03265 at 718.487 kb on + strand, within HSERO_RS03265 at 718.500 kb on - strand, within HSERO_RS03265 at 718.500 kb on - strand, within HSERO_RS03265 at 718.528 kb on - strand, within HSERO_RS03265 at 718.616 kb on + strand, within HSERO_RS03265 at 718.812 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 716,637 - +1.1 716,639 + HSERO_RS03255 0.67 -0.9 716,682 + HSERO_RS03255 0.72 +0.0 716,722 - HSERO_RS03255 0.76 -0.0 716,825 - HSERO_RS03255 0.86 +0.1 716,825 - HSERO_RS03255 0.86 +1.0 716,825 - HSERO_RS03255 0.86 -0.2 716,995 - +0.6 717,011 + -1.3 717,026 - +0.8 717,267 + -1.1 717,267 + -1.2 717,280 - +0.5 717,535 - HSERO_RS03260 0.36 -0.9 718,098 - HSERO_RS03265 0.10 -1.3 718,183 + HSERO_RS03265 0.16 -2.6 718,222 + HSERO_RS03265 0.18 +0.4 718,230 - HSERO_RS03265 0.19 -0.3 718,487 + HSERO_RS03265 0.34 -1.5 718,500 - HSERO_RS03265 0.35 -1.7 718,500 - HSERO_RS03265 0.35 -2.2 718,528 - HSERO_RS03265 0.37 -1.7 718,616 + HSERO_RS03265 0.42 -1.2 718,812 - +0.2
Or see this region's nucleotide sequence