Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03115 and HSERO_RS03120 are separated by 50 nucleotides HSERO_RS03120 and HSERO_RS03125 are separated by 5 nucleotides HSERO_RS03125 and HSERO_RS03130 overlap by 4 nucleotides
HSERO_RS03115: HSERO_RS03115 - methyl-accepting chemotaxis protein, at 681,819 to 683,606
_RS03115
HSERO_RS03120: HSERO_RS03120 - chemotaxis protein CheW, at 683,657 to 684,241
_RS03120
HSERO_RS03125: HSERO_RS03125 - SAM-dependent methyltransferase, at 684,247 to 685,080
_RS03125
HSERO_RS03130: HSERO_RS03130 - chemotaxis protein CheY, at 685,077 to 686,222
_RS03130
Position (kb) 684
685
686 Strain fitness (log2 ratio) -1
0
1
2 at 683.427 kb on - strand, within HSERO_RS03115 at 683.559 kb on + strand at 683.600 kb on + strand at 683.600 kb on + strand at 683.600 kb on + strand at 683.737 kb on - strand, within HSERO_RS03120 at 683.817 kb on - strand, within HSERO_RS03120 at 684.116 kb on + strand, within HSERO_RS03120 at 684.335 kb on - strand, within HSERO_RS03125 at 684.435 kb on + strand, within HSERO_RS03125 at 684.616 kb on + strand, within HSERO_RS03125 at 684.625 kb on - strand, within HSERO_RS03125 at 684.721 kb on + strand, within HSERO_RS03125 at 684.733 kb on - strand, within HSERO_RS03125 at 684.751 kb on - strand at 684.904 kb on + strand, within HSERO_RS03125 at 685.033 kb on - strand at 685.120 kb on + strand at 685.164 kb on + strand at 685.378 kb on + strand, within HSERO_RS03130 at 685.379 kb on - strand, within HSERO_RS03130 at 685.476 kb on + strand, within HSERO_RS03130 at 685.527 kb on - strand, within HSERO_RS03130 at 685.540 kb on + strand, within HSERO_RS03130 at 685.557 kb on + strand, within HSERO_RS03130 at 685.635 kb on - strand, within HSERO_RS03130 at 685.728 kb on - strand, within HSERO_RS03130 at 685.738 kb on - strand, within HSERO_RS03130 at 685.760 kb on - strand, within HSERO_RS03130 at 685.772 kb on - strand, within HSERO_RS03130
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 683,427 - HSERO_RS03115 0.90 +0.1 683,559 + -1.1 683,600 + -0.9 683,600 + -0.3 683,600 + -0.7 683,737 - HSERO_RS03120 0.14 -0.5 683,817 - HSERO_RS03120 0.27 -0.7 684,116 + HSERO_RS03120 0.78 +2.2 684,335 - HSERO_RS03125 0.11 -1.6 684,435 + HSERO_RS03125 0.23 -0.7 684,616 + HSERO_RS03125 0.44 -0.0 684,625 - HSERO_RS03125 0.45 +0.1 684,721 + HSERO_RS03125 0.57 -0.0 684,733 - HSERO_RS03125 0.58 -1.2 684,751 - +1.0 684,904 + HSERO_RS03125 0.79 -1.6 685,033 - +0.2 685,120 + -0.4 685,164 + +0.4 685,378 + HSERO_RS03130 0.26 -0.9 685,379 - HSERO_RS03130 0.26 -0.2 685,476 + HSERO_RS03130 0.35 +0.2 685,527 - HSERO_RS03130 0.39 +0.3 685,540 + HSERO_RS03130 0.40 -1.5 685,557 + HSERO_RS03130 0.42 +0.6 685,635 - HSERO_RS03130 0.49 +0.7 685,728 - HSERO_RS03130 0.57 -0.1 685,738 - HSERO_RS03130 0.58 -0.4 685,760 - HSERO_RS03130 0.60 +1.2 685,772 - HSERO_RS03130 0.61 -1.1
Or see this region's nucleotide sequence