Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02760 and HSERO_RS02765 are separated by 129 nucleotides HSERO_RS02765 and HSERO_RS02770 are separated by 430 nucleotides HSERO_RS02770 and HSERO_RS02775 are separated by 255 nucleotides HSERO_RS02775 and HSERO_RS02780 are separated by 51 nucleotides
HSERO_RS02760: HSERO_RS02760 - hypothetical protein, at 611,155 to 611,646
_RS02760
HSERO_RS02765: HSERO_RS02765 - general stress protein, at 611,776 to 611,985
_RS02765
HSERO_RS02770: HSERO_RS02770 - hypothetical protein, at 612,416 to 612,664
_RS02770
HSERO_RS02775: HSERO_RS02775 - hypothetical protein, at 612,920 to 613,150
_RS02775
HSERO_RS02780: HSERO_RS02780 - hypothetical protein, at 613,202 to 613,435
_RS02780
Position (kb) 612
613 Strain fitness (log2 ratio) -1
0
1
2 at 611.524 kb on + strand, within HSERO_RS02760 at 611.615 kb on - strand at 611.802 kb on - strand, within HSERO_RS02765 at 612.071 kb on - strand at 612.144 kb on + strand at 612.471 kb on + strand, within HSERO_RS02770 at 612.623 kb on - strand, within HSERO_RS02770 at 612.638 kb on + strand, within HSERO_RS02770 at 612.891 kb on + strand at 612.966 kb on - strand, within HSERO_RS02775 at 613.217 kb on + strand at 613.247 kb on - strand, within HSERO_RS02780 at 613.395 kb on - strand, within HSERO_RS02780
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 611,524 + HSERO_RS02760 0.75 -0.4 611,615 - +1.8 611,802 - HSERO_RS02765 0.12 +0.0 612,071 - -0.0 612,144 + -1.4 612,471 + HSERO_RS02770 0.22 -1.1 612,623 - HSERO_RS02770 0.83 +0.1 612,638 + HSERO_RS02770 0.89 -0.5 612,891 + +0.2 612,966 - HSERO_RS02775 0.20 +0.3 613,217 + -0.7 613,247 - HSERO_RS02780 0.19 +0.8 613,395 - HSERO_RS02780 0.82 -1.7
Or see this region's nucleotide sequence