Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS02365

Experiment: C.elegans, mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS02360 and HSERO_RS02365 are separated by 159 nucleotidesHSERO_RS02365 and HSERO_RS02370 overlap by 1 nucleotides HSERO_RS02360: HSERO_RS02360 - ADP-heptose--LPS heptosyltransferase, at 514,770 to 515,747 _RS02360 HSERO_RS02365: HSERO_RS02365 - hypothetical protein, at 515,907 to 516,776 _RS02365 HSERO_RS02370: HSERO_RS02370 - 3-deoxy-D-manno-octulosonic acid transferase, at 516,776 to 518,062 _RS02370 Position (kb) 515 516 517Strain fitness (log2 ratio) -1 0 1 2 3at 515.792 kb on - strandat 516.110 kb on + strand, within HSERO_RS02365at 516.110 kb on + strand, within HSERO_RS02365at 516.110 kb on + strand, within HSERO_RS02365at 516.688 kb on + strand, within HSERO_RS02365at 516.732 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1
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515,792 - -0.0
516,110 + HSERO_RS02365 0.23 -0.8
516,110 + HSERO_RS02365 0.23 -1.3
516,110 + HSERO_RS02365 0.23 -0.7
516,688 + HSERO_RS02365 0.90 -1.1
516,732 + +2.8

Or see this region's nucleotide sequence