Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02250 and HSERO_RS02255 are separated by 207 nucleotides HSERO_RS02255 and HSERO_RS02260 are separated by 0 nucleotides HSERO_RS02260 and HSERO_RS02265 are separated by 435 nucleotides
HSERO_RS02250: HSERO_RS02250 - hypothetical protein, at 491,474 to 492,166
_RS02250
HSERO_RS02255: HSERO_RS02255 - decarboxylase, at 492,374 to 493,120
_RS02255
HSERO_RS02260: HSERO_RS02260 - DNA polymerase I, at 493,121 to 495,883
_RS02260
HSERO_RS02265: HSERO_RS02265 - chemotaxis protein, at 496,319 to 498,010
_RS02265
Position (kb) 493
494
495
496 Strain fitness (log2 ratio) -2
-1
0
1
2 at 492.123 kb on + strand at 492.124 kb on + strand at 492.175 kb on + strand at 492.270 kb on + strand at 492.270 kb on + strand at 492.370 kb on + strand at 492.390 kb on - strand at 492.395 kb on - strand at 492.480 kb on + strand, within HSERO_RS02255 at 492.564 kb on + strand, within HSERO_RS02255 at 492.855 kb on - strand, within HSERO_RS02255 at 492.987 kb on - strand, within HSERO_RS02255 at 493.909 kb on + strand, within HSERO_RS02260 at 493.917 kb on - strand, within HSERO_RS02260 at 494.804 kb on + strand, within HSERO_RS02260 at 495.182 kb on + strand, within HSERO_RS02260 at 495.190 kb on - strand, within HSERO_RS02260 at 495.691 kb on - strand at 496.020 kb on + strand at 496.162 kb on + strand at 496.237 kb on + strand at 496.303 kb on + strand at 496.424 kb on + strand at 496.485 kb on - strand at 496.540 kb on + strand, within HSERO_RS02265 at 496.590 kb on + strand, within HSERO_RS02265 at 496.627 kb on + strand, within HSERO_RS02265 at 496.637 kb on + strand, within HSERO_RS02265 at 496.643 kb on + strand, within HSERO_RS02265 at 496.665 kb on + strand, within HSERO_RS02265 at 496.744 kb on + strand, within HSERO_RS02265 at 496.786 kb on - strand, within HSERO_RS02265
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 492,123 + +1.7 492,124 + -0.4 492,175 + +1.6 492,270 + +1.2 492,270 + +0.8 492,370 + -0.4 492,390 - +0.5 492,395 - -2.5 492,480 + HSERO_RS02255 0.14 +0.4 492,564 + HSERO_RS02255 0.25 +0.2 492,855 - HSERO_RS02255 0.64 -0.5 492,987 - HSERO_RS02255 0.82 -0.0 493,909 + HSERO_RS02260 0.29 -1.8 493,917 - HSERO_RS02260 0.29 +0.8 494,804 + HSERO_RS02260 0.61 +0.2 495,182 + HSERO_RS02260 0.75 -0.2 495,190 - HSERO_RS02260 0.75 +0.2 495,691 - -0.2 496,020 + -0.2 496,162 + +0.5 496,237 + -1.0 496,303 + +0.6 496,424 + -0.0 496,485 - -0.4 496,540 + HSERO_RS02265 0.13 +0.8 496,590 + HSERO_RS02265 0.16 +0.2 496,627 + HSERO_RS02265 0.18 +1.8 496,637 + HSERO_RS02265 0.19 -0.2 496,643 + HSERO_RS02265 0.19 -1.1 496,665 + HSERO_RS02265 0.20 -0.9 496,744 + HSERO_RS02265 0.25 -0.1 496,786 - HSERO_RS02265 0.28 -0.8
Or see this region's nucleotide sequence