Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02210 and HSERO_RS02215 are separated by 216 nucleotides HSERO_RS02215 and HSERO_RS02220 are separated by 64 nucleotides
HSERO_RS02210: HSERO_RS02210 - sugar ABC transporter ATP-binding protein, at 482,125 to 483,243
_RS02210
HSERO_RS02215: HSERO_RS02215 - D-arabinitol 4-dehydrogenase, at 483,460 to 484,893
_RS02215
HSERO_RS02220: HSERO_RS02220 - xylulokinase, at 484,958 to 486,430
_RS02220
Position (kb) 483
484
485 Strain fitness (log2 ratio) -1
0
1
2 at 482.492 kb on + strand, within HSERO_RS02210 at 482.602 kb on + strand, within HSERO_RS02210 at 482.690 kb on + strand, within HSERO_RS02210 at 482.818 kb on + strand, within HSERO_RS02210 at 483.190 kb on + strand at 483.352 kb on + strand at 483.361 kb on + strand at 483.457 kb on + strand at 483.465 kb on - strand at 483.465 kb on - strand at 484.316 kb on - strand, within HSERO_RS02215 at 484.940 kb on - strand at 484.990 kb on + strand at 485.084 kb on - strand at 485.276 kb on - strand, within HSERO_RS02220 at 485.276 kb on - strand, within HSERO_RS02220 at 485.362 kb on + strand, within HSERO_RS02220 at 485.367 kb on + strand, within HSERO_RS02220 at 485.588 kb on + strand, within HSERO_RS02220 at 485.598 kb on + strand, within HSERO_RS02220 at 485.620 kb on + strand, within HSERO_RS02220 at 485.620 kb on + strand, within HSERO_RS02220 at 485.620 kb on + strand, within HSERO_RS02220 at 485.628 kb on - strand, within HSERO_RS02220 at 485.628 kb on - strand, within HSERO_RS02220 at 485.831 kb on - strand, within HSERO_RS02220
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 482,492 + HSERO_RS02210 0.33 -0.4 482,602 + HSERO_RS02210 0.43 -0.7 482,690 + HSERO_RS02210 0.50 -0.3 482,818 + HSERO_RS02210 0.62 +1.2 483,190 + +0.5 483,352 + +0.7 483,361 + -1.3 483,457 + -0.6 483,465 - -0.2 483,465 - -0.7 484,316 - HSERO_RS02215 0.60 +1.2 484,940 - +2.4 484,990 + +0.6 485,084 - +1.0 485,276 - HSERO_RS02220 0.22 -0.3 485,276 - HSERO_RS02220 0.22 +0.0 485,362 + HSERO_RS02220 0.27 +1.0 485,367 + HSERO_RS02220 0.28 +0.5 485,588 + HSERO_RS02220 0.43 -0.1 485,598 + HSERO_RS02220 0.43 -1.0 485,620 + HSERO_RS02220 0.45 -1.7 485,620 + HSERO_RS02220 0.45 -0.4 485,620 + HSERO_RS02220 0.45 -0.3 485,628 - HSERO_RS02220 0.45 -1.5 485,628 - HSERO_RS02220 0.45 +0.8 485,831 - HSERO_RS02220 0.59 +1.1
Or see this region's nucleotide sequence