Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02195 and HSERO_RS02200 overlap by 4 nucleotides HSERO_RS02200 and HSERO_RS02205 overlap by 1 nucleotides HSERO_RS02205 and HSERO_RS02210 are separated by 46 nucleotides
HSERO_RS02195: HSERO_RS02195 - sugar ABC transporter permease, at 479,558 to 480,532
_RS02195
HSERO_RS02200: HSERO_RS02200 - mannitol ABC transporter permease, at 480,529 to 481,344
_RS02200
HSERO_RS02205: HSERO_RS02205 - phosphatase, at 481,344 to 482,078
_RS02205
HSERO_RS02210: HSERO_RS02210 - sugar ABC transporter ATP-binding protein, at 482,125 to 483,243
_RS02210
Position (kb) 481
482
483 Strain fitness (log2 ratio) -2
-1
0
1
2 at 480.404 kb on + strand, within HSERO_RS02195 at 480.413 kb on - strand, within HSERO_RS02195 at 480.508 kb on + strand at 480.516 kb on - strand at 480.516 kb on - strand at 480.614 kb on - strand at 480.648 kb on - strand, within HSERO_RS02200 at 480.705 kb on - strand, within HSERO_RS02200 at 480.727 kb on + strand, within HSERO_RS02200 at 480.855 kb on + strand, within HSERO_RS02200 at 480.929 kb on - strand, within HSERO_RS02200 at 480.964 kb on + strand, within HSERO_RS02200 at 481.173 kb on + strand, within HSERO_RS02200 at 481.230 kb on + strand, within HSERO_RS02200 at 481.238 kb on - strand, within HSERO_RS02200 at 481.287 kb on + strand at 481.318 kb on + strand at 481.318 kb on + strand at 481.812 kb on - strand, within HSERO_RS02205 at 481.883 kb on - strand, within HSERO_RS02205 at 481.965 kb on + strand, within HSERO_RS02205 at 482.066 kb on - strand at 482.105 kb on - strand at 482.149 kb on - strand at 482.372 kb on + strand, within HSERO_RS02210 at 482.439 kb on + strand, within HSERO_RS02210 at 482.492 kb on + strand, within HSERO_RS02210 at 482.602 kb on + strand, within HSERO_RS02210 at 482.690 kb on + strand, within HSERO_RS02210 at 482.818 kb on + strand, within HSERO_RS02210
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 480,404 + HSERO_RS02195 0.87 +0.7 480,413 - HSERO_RS02195 0.88 +0.6 480,508 + +0.9 480,516 - -1.4 480,516 - +0.6 480,614 - +2.6 480,648 - HSERO_RS02200 0.15 +0.1 480,705 - HSERO_RS02200 0.22 -1.2 480,727 + HSERO_RS02200 0.24 +1.1 480,855 + HSERO_RS02200 0.40 -0.3 480,929 - HSERO_RS02200 0.49 +0.2 480,964 + HSERO_RS02200 0.53 -1.7 481,173 + HSERO_RS02200 0.79 -0.0 481,230 + HSERO_RS02200 0.86 +0.4 481,238 - HSERO_RS02200 0.87 -2.5 481,287 + +0.1 481,318 + +0.6 481,318 + -0.2 481,812 - HSERO_RS02205 0.64 +0.5 481,883 - HSERO_RS02205 0.73 +0.2 481,965 + HSERO_RS02205 0.84 -0.1 482,066 - -0.6 482,105 - +0.1 482,149 - -0.0 482,372 + HSERO_RS02210 0.22 -0.3 482,439 + HSERO_RS02210 0.28 +0.3 482,492 + HSERO_RS02210 0.33 -0.4 482,602 + HSERO_RS02210 0.43 -0.7 482,690 + HSERO_RS02210 0.50 -0.3 482,818 + HSERO_RS02210 0.62 +1.2
Or see this region's nucleotide sequence