Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02150 and HSERO_RS02155 are separated by 233 nucleotides HSERO_RS02155 and HSERO_RS02160 are separated by 108 nucleotides HSERO_RS02160 and HSERO_RS02165 are separated by 26 nucleotides
HSERO_RS02150: HSERO_RS02150 - MFS transporter, at 468,153 to 469,328
_RS02150
HSERO_RS02155: HSERO_RS02155 - chorismate mutase, at 469,562 to 470,131
_RS02155
HSERO_RS02160: HSERO_RS02160 - DNA-dependent helicase, at 470,240 to 472,519
_RS02160
HSERO_RS02165: HSERO_RS02165 - molecular chaperone DnaJ, at 472,546 to 473,649
_RS02165
Position (kb) 470
471
472
473 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 469.627 kb on + strand, within HSERO_RS02155 at 469.750 kb on - strand, within HSERO_RS02155 at 469.843 kb on + strand, within HSERO_RS02155 at 469.999 kb on - strand, within HSERO_RS02155 at 470.170 kb on + strand at 470.193 kb on - strand at 470.193 kb on - strand at 470.254 kb on + strand at 470.460 kb on - strand at 470.510 kb on - strand, within HSERO_RS02160 at 470.588 kb on - strand, within HSERO_RS02160 at 472.267 kb on - strand, within HSERO_RS02160 at 472.296 kb on + strand at 472.331 kb on + strand at 472.451 kb on + strand at 472.544 kb on + strand at 472.606 kb on - strand at 472.606 kb on - strand at 472.645 kb on + strand at 472.678 kb on - strand, within HSERO_RS02165 at 472.933 kb on + strand, within HSERO_RS02165 at 472.995 kb on - strand, within HSERO_RS02165 at 473.224 kb on + strand, within HSERO_RS02165 at 473.346 kb on - strand, within HSERO_RS02165 at 473.473 kb on + strand, within HSERO_RS02165 at 473.481 kb on - strand, within HSERO_RS02165
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 469,627 + HSERO_RS02155 0.11 -0.6 469,750 - HSERO_RS02155 0.33 +0.3 469,843 + HSERO_RS02155 0.49 -1.6 469,999 - HSERO_RS02155 0.77 -1.6 470,170 + +0.2 470,193 - +2.0 470,193 - -0.3 470,254 + -0.5 470,460 - +2.8 470,510 - HSERO_RS02160 0.12 -0.2 470,588 - HSERO_RS02160 0.15 +0.8 472,267 - HSERO_RS02160 0.89 -1.2 472,296 + -0.8 472,331 + -1.2 472,451 + -1.1 472,544 + -0.4 472,606 - -2.0 472,606 - -0.6 472,645 + -1.9 472,678 - HSERO_RS02165 0.12 +3.8 472,933 + HSERO_RS02165 0.35 +2.1 472,995 - HSERO_RS02165 0.41 -0.4 473,224 + HSERO_RS02165 0.61 +1.6 473,346 - HSERO_RS02165 0.72 -1.3 473,473 + HSERO_RS02165 0.84 -0.2 473,481 - HSERO_RS02165 0.85 -0.3
Or see this region's nucleotide sequence