Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02100 and HSERO_RS02105 are separated by 19 nucleotides HSERO_RS02105 and HSERO_RS02110 are separated by 11 nucleotides HSERO_RS02110 and HSERO_RS02115 are separated by 157 nucleotides
HSERO_RS02100: HSERO_RS02100 - 4-oxalocrotonate decarboxylase, at 457,384 to 458,226
_RS02100
HSERO_RS02105: HSERO_RS02105 - hypothetical protein, at 458,246 to 458,701
_RS02105
HSERO_RS02110: HSERO_RS02110 - hypothetical protein, at 458,713 to 459,177
_RS02110
HSERO_RS02115: HSERO_RS02115 - valyl-tRNA synthetase, at 459,335 to 462,145
_RS02115
Position (kb) 458
459
460 Strain fitness (log2 ratio) -1
0
1 at 457.917 kb on + strand, within HSERO_RS02100 at 458.235 kb on - strand at 458.540 kb on + strand, within HSERO_RS02105 at 458.540 kb on + strand, within HSERO_RS02105 at 458.541 kb on - strand, within HSERO_RS02105 at 458.588 kb on - strand, within HSERO_RS02105 at 458.698 kb on - strand at 458.739 kb on - strand at 458.873 kb on + strand, within HSERO_RS02110 at 459.035 kb on + strand, within HSERO_RS02110 at 459.180 kb on - strand at 459.244 kb on + strand at 459.264 kb on + strand at 459.331 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 457,917 + HSERO_RS02100 0.63 +0.8 458,235 - -1.1 458,540 + HSERO_RS02105 0.64 -0.4 458,540 + HSERO_RS02105 0.64 +0.7 458,541 - HSERO_RS02105 0.65 +0.1 458,588 - HSERO_RS02105 0.75 -1.6 458,698 - +0.8 458,739 - +1.5 458,873 + HSERO_RS02110 0.34 -1.2 459,035 + HSERO_RS02110 0.69 -0.7 459,180 - +0.0 459,244 + +0.2 459,264 + +0.2 459,331 - -1.2
Or see this region's nucleotide sequence