Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS01935

Experiment: C.elegans, mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS01925 and HSERO_RS01930 are separated by 95 nucleotidesHSERO_RS01930 and HSERO_RS01935 are separated by 134 nucleotidesHSERO_RS01935 and HSERO_RS01940 are separated by 96 nucleotidesHSERO_RS01940 and HSERO_RS01945 overlap by 1 nucleotides HSERO_RS01925: HSERO_RS01925 - acetyl-CoA carboxylase biotin carboxylase subunit, at 423,308 to 424,687 _RS01925 HSERO_RS01930: HSERO_RS01930 - acetyl-CoA carboxylase, at 424,783 to 425,256 _RS01930 HSERO_RS01935: HSERO_RS01935 - 3-dehydroquinate dehydratase, at 425,391 to 425,828 _RS01935 HSERO_RS01940: HSERO_RS01940 - thioredoxin, at 425,925 to 426,446 _RS01940 HSERO_RS01945: HSERO_RS01945 - hypothetical protein, at 426,446 to 427,087 _RS01945 Position (kb) 425 426Strain fitness (log2 ratio) -2 -1 0 1at 425.397 kb on - strandat 425.456 kb on - strand, within HSERO_RS01935at 425.573 kb on - strand, within HSERO_RS01935at 425.779 kb on - strand, within HSERO_RS01935at 426.490 kb on - strandat 426.647 kb on - strand, within HSERO_RS01945at 426.756 kb on - strand, within HSERO_RS01945

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1
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425,397 - +1.1
425,456 - HSERO_RS01935 0.15 -1.7
425,573 - HSERO_RS01935 0.42 -2.3
425,779 - HSERO_RS01935 0.89 +0.8
426,490 - -0.8
426,647 - HSERO_RS01945 0.31 -0.0
426,756 - HSERO_RS01945 0.48 -0.3

Or see this region's nucleotide sequence