Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS01860 and HSERO_RS01865 are separated by 1 nucleotides HSERO_RS01865 and HSERO_RS01870 are separated by 133 nucleotides HSERO_RS01870 and HSERO_RS01875 overlap by 4 nucleotides HSERO_RS01875 and HSERO_RS01880 are separated by 3 nucleotides
HSERO_RS01860: HSERO_RS01860 - sulfonate ABC transporter permease, at 408,898 to 409,719
_RS01860
HSERO_RS01865: HSERO_RS01865 - sulfonate ABC transporter ATP-binding protein, at 409,721 to 410,530
_RS01865
HSERO_RS01870: HSERO_RS01870 - ABC transporter permease, at 410,664 to 411,476
_RS01870
HSERO_RS01875: HSERO_RS01875 - hypothetical protein, at 411,473 to 411,757
_RS01875
HSERO_RS01880: HSERO_RS01880 - N-acetyl-anhydromuranmyl-L-alanine amidase, at 411,761 to 412,384
_RS01880
Position (kb) 410
411
412 Strain fitness (log2 ratio) -2
-1
0
1
2 at 409.749 kb on + strand at 409.749 kb on + strand at 409.757 kb on - strand at 409.915 kb on - strand, within HSERO_RS01865 at 410.090 kb on + strand, within HSERO_RS01865 at 410.483 kb on - strand at 410.489 kb on + strand at 410.514 kb on - strand at 410.540 kb on + strand at 410.638 kb on + strand at 410.649 kb on + strand at 410.657 kb on - strand at 410.696 kb on + strand at 410.789 kb on + strand, within HSERO_RS01870 at 411.213 kb on - strand, within HSERO_RS01870 at 411.253 kb on + strand, within HSERO_RS01870 at 411.385 kb on + strand, within HSERO_RS01870 at 411.385 kb on + strand, within HSERO_RS01870 at 411.687 kb on + strand, within HSERO_RS01875 at 411.713 kb on + strand, within HSERO_RS01875 at 411.949 kb on - strand, within HSERO_RS01880 at 412.163 kb on + strand, within HSERO_RS01880 at 412.257 kb on + strand, within HSERO_RS01880 at 412.267 kb on + strand, within HSERO_RS01880 at 412.356 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 409,749 + -0.8 409,749 + -1.4 409,757 - +0.6 409,915 - HSERO_RS01865 0.24 -0.3 410,090 + HSERO_RS01865 0.46 +0.7 410,483 - -0.7 410,489 + +0.3 410,514 - -0.3 410,540 + +0.8 410,638 + +1.0 410,649 + +0.7 410,657 - +0.1 410,696 + -1.1 410,789 + HSERO_RS01870 0.15 +2.7 411,213 - HSERO_RS01870 0.68 -1.9 411,253 + HSERO_RS01870 0.72 -1.0 411,385 + HSERO_RS01870 0.89 -1.0 411,385 + HSERO_RS01870 0.89 -1.3 411,687 + HSERO_RS01875 0.75 +2.0 411,713 + HSERO_RS01875 0.84 -0.6 411,949 - HSERO_RS01880 0.30 +0.7 412,163 + HSERO_RS01880 0.64 +1.2 412,257 + HSERO_RS01880 0.79 +0.3 412,267 + HSERO_RS01880 0.81 +1.0 412,356 + -0.3
Or see this region's nucleotide sequence