Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS01775 and HSERO_RS01780 are separated by 428 nucleotides HSERO_RS01780 and HSERO_RS01785 are separated by 109 nucleotides HSERO_RS01785 and HSERO_RS01790 are separated by 143 nucleotides HSERO_RS01790 and HSERO_RS01795 are separated by 16 nucleotides
HSERO_RS01775: HSERO_RS01775 - hypothetical protein, at 394,189 to 395,493
_RS01775
HSERO_RS01780: HSERO_RS01780 - translation initiation factor IF-1, at 395,922 to 396,185
_RS01780
HSERO_RS01785: HSERO_RS01785 - hypothetical protein, at 396,295 to 396,546
_RS01785
HSERO_RS01790: HSERO_RS01790 - tRNA-Pro, at 396,690 to 396,766
_RS01790
HSERO_RS01795: HSERO_RS01795 - octaprenyl diphosphate synthase, at 396,783 to 397,772
_RS01795
Position (kb) 395
396
397 Strain fitness (log2 ratio) -2
-1
0
1 at 394.986 kb on + strand, within HSERO_RS01775 at 395.080 kb on + strand, within HSERO_RS01775 at 395.239 kb on + strand, within HSERO_RS01775 at 395.239 kb on + strand, within HSERO_RS01775 at 395.266 kb on - strand, within HSERO_RS01775 at 395.295 kb on + strand, within HSERO_RS01775 at 395.372 kb on - strand at 395.450 kb on - strand at 395.457 kb on + strand at 395.701 kb on + strand at 395.703 kb on + strand at 395.913 kb on - strand at 395.999 kb on + strand, within HSERO_RS01780 at 396.347 kb on - strand, within HSERO_RS01785 at 396.412 kb on - strand, within HSERO_RS01785
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 394,986 + HSERO_RS01775 0.61 -0.3 395,080 + HSERO_RS01775 0.68 -1.3 395,239 + HSERO_RS01775 0.80 -0.1 395,239 + HSERO_RS01775 0.80 +0.1 395,266 - HSERO_RS01775 0.83 +0.5 395,295 + HSERO_RS01775 0.85 +0.5 395,372 - +0.0 395,450 - -2.1 395,457 + +0.5 395,701 + +1.2 395,703 + +0.0 395,913 - +0.7 395,999 + HSERO_RS01780 0.29 -0.8 396,347 - HSERO_RS01785 0.21 -0.0 396,412 - HSERO_RS01785 0.46 -0.4
Or see this region's nucleotide sequence