Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS01520 and HSERO_RS01525 are separated by 22 nucleotides HSERO_RS01525 and HSERO_RS01530 are separated by 94 nucleotides HSERO_RS01530 and HSERO_RS01535 are separated by 417 nucleotides
HSERO_RS01520: HSERO_RS01520 - hemagglutinin, at 330,490 to 334,758
_RS01520
HSERO_RS01525: HSERO_RS01525 - hypothetical protein, at 334,781 to 335,539
_RS01525
HSERO_RS01530: HSERO_RS01530 - 3',5'-cyclic-nucleotide phosphodiesterase, at 335,634 to 336,407
_RS01530
HSERO_RS01535: HSERO_RS01535 - phosphohydrolase with GAF sensor, at 336,825 to 338,483
_RS01535
Position (kb) 335
336
337 Strain fitness (log2 ratio) -2
-1
0
1 at 334.766 kb on + strand at 334.800 kb on - strand at 335.017 kb on - strand, within HSERO_RS01525 at 335.061 kb on + strand, within HSERO_RS01525 at 335.061 kb on + strand, within HSERO_RS01525 at 335.134 kb on + strand, within HSERO_RS01525 at 335.142 kb on - strand, within HSERO_RS01525 at 335.251 kb on + strand, within HSERO_RS01525 at 335.384 kb on - strand, within HSERO_RS01525 at 335.531 kb on + strand at 335.555 kb on - strand at 335.736 kb on - strand, within HSERO_RS01530 at 335.800 kb on - strand, within HSERO_RS01530 at 335.987 kb on - strand, within HSERO_RS01530 at 335.999 kb on - strand, within HSERO_RS01530 at 336.001 kb on - strand, within HSERO_RS01530 at 336.349 kb on - strand at 336.349 kb on - strand at 336.470 kb on - strand at 336.526 kb on + strand at 336.675 kb on - strand at 336.675 kb on - strand at 336.752 kb on + strand at 336.787 kb on + strand at 336.892 kb on + strand at 336.988 kb on - strand at 337.195 kb on + strand, within HSERO_RS01535
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 334,766 + -2.3 334,800 - -1.0 335,017 - HSERO_RS01525 0.31 -0.1 335,061 + HSERO_RS01525 0.37 +0.6 335,061 + HSERO_RS01525 0.37 +0.7 335,134 + HSERO_RS01525 0.47 -0.1 335,142 - HSERO_RS01525 0.48 +0.1 335,251 + HSERO_RS01525 0.62 +1.1 335,384 - HSERO_RS01525 0.79 -0.1 335,531 + -0.1 335,555 - +0.1 335,736 - HSERO_RS01530 0.13 -0.1 335,800 - HSERO_RS01530 0.21 -0.5 335,987 - HSERO_RS01530 0.46 +0.1 335,999 - HSERO_RS01530 0.47 -1.0 336,001 - HSERO_RS01530 0.47 -2.3 336,349 - -0.7 336,349 - +0.5 336,470 - -1.2 336,526 + +0.2 336,675 - +0.8 336,675 - +0.2 336,752 + -0.0 336,787 + +0.4 336,892 + +1.1 336,988 - +0.2 337,195 + HSERO_RS01535 0.22 +0.1
Or see this region's nucleotide sequence