Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS01235 and HSERO_RS01240 are separated by 170 nucleotides HSERO_RS01240 and HSERO_RS01245 are separated by 93 nucleotides HSERO_RS01245 and HSERO_RS01250 are separated by 210 nucleotides
HSERO_RS01235: HSERO_RS01235 - type IV secretion protein Rhs, at 257,057 to 259,957
_RS01235
HSERO_RS01240: HSERO_RS01240 - RNA-binding protein S4, at 260,128 to 260,502
_RS01240
HSERO_RS01245: HSERO_RS01245 - hypothetical protein, at 260,596 to 261,060
_RS01245
HSERO_RS01250: HSERO_RS01250 - TetR family transcriptional regulator, at 261,271 to 261,972
_RS01250
Position (kb) 260
261 Strain fitness (log2 ratio) -1
0
1
2 at 259.164 kb on - strand, within HSERO_RS01235 at 259.171 kb on + strand, within HSERO_RS01235 at 259.370 kb on + strand, within HSERO_RS01235 at 259.648 kb on + strand, within HSERO_RS01235 at 259.650 kb on - strand, within HSERO_RS01235 at 259.678 kb on + strand at 259.736 kb on + strand at 259.753 kb on - strand at 259.763 kb on - strand at 259.857 kb on - strand at 259.872 kb on - strand at 259.961 kb on - strand at 259.983 kb on - strand at 260.125 kb on + strand at 260.135 kb on + strand at 260.135 kb on - strand at 260.273 kb on + strand, within HSERO_RS01240 at 260.308 kb on + strand, within HSERO_RS01240 at 260.308 kb on + strand, within HSERO_RS01240 at 260.360 kb on + strand, within HSERO_RS01240 at 260.523 kb on + strand at 260.636 kb on - strand at 260.636 kb on - strand at 260.760 kb on - strand, within HSERO_RS01245 at 261.321 kb on + strand at 261.329 kb on - strand at 261.401 kb on + strand, within HSERO_RS01250
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 259,164 - HSERO_RS01235 0.73 +0.5 259,171 + HSERO_RS01235 0.73 -0.2 259,370 + HSERO_RS01235 0.80 +0.9 259,648 + HSERO_RS01235 0.89 -0.2 259,650 - HSERO_RS01235 0.89 -0.5 259,678 + +0.1 259,736 + -0.0 259,753 - +0.5 259,763 - +1.2 259,857 - -0.3 259,872 - +0.5 259,961 - -0.6 259,983 - -0.2 260,125 + +0.6 260,135 + +0.9 260,135 - +0.5 260,273 + HSERO_RS01240 0.39 -0.9 260,308 + HSERO_RS01240 0.48 -1.0 260,308 + HSERO_RS01240 0.48 -0.9 260,360 + HSERO_RS01240 0.62 -0.2 260,523 + +1.0 260,636 - -0.4 260,636 - -0.4 260,760 - HSERO_RS01245 0.35 -0.8 261,321 + +0.6 261,329 - +2.5 261,401 + HSERO_RS01250 0.19 -0.9
Or see this region's nucleotide sequence