Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS00835

Experiment: C.elegans, mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS00830 and HSERO_RS00835 are separated by 88 nucleotidesHSERO_RS00835 and HSERO_RS00840 are separated by 510 nucleotides HSERO_RS00830: HSERO_RS00830 - peptidase S41, at 171,874 to 173,370 _RS00830 HSERO_RS00835: HSERO_RS00835 - molybdopterin biosynthesis protein MoeB, at 173,459 to 174,223 _RS00835 HSERO_RS00840: HSERO_RS00840 - molecular chaperone DnaK, at 174,734 to 175,138 _RS00840 Position (kb) 173 174 175Strain fitness (log2 ratio) -1 0 1at 173.259 kb on + strandat 173.287 kb on - strandat 173.474 kb on - strandat 173.610 kb on + strand, within HSERO_RS00835at 173.618 kb on - strand, within HSERO_RS00835at 173.651 kb on - strand, within HSERO_RS00835at 173.937 kb on - strand, within HSERO_RS00835at 174.016 kb on - strand, within HSERO_RS00835at 174.280 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1
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173,259 + +0.0
173,287 - +0.7
173,474 - +1.1
173,610 + HSERO_RS00835 0.20 -0.1
173,618 - HSERO_RS00835 0.21 +0.1
173,651 - HSERO_RS00835 0.25 -0.3
173,937 - HSERO_RS00835 0.62 -0.1
174,016 - HSERO_RS00835 0.73 -0.6
174,280 - -0.7

Or see this region's nucleotide sequence