Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS00800 and HSERO_RS00805 are separated by 117 nucleotides HSERO_RS00805 and HSERO_RS00810 are separated by 52 nucleotides HSERO_RS00810 and HSERO_RS00815 overlap by 4 nucleotides HSERO_RS00815 and HSERO_RS00820 are separated by 150 nucleotides HSERO_RS00820 and HSERO_RS00825 are separated by 92 nucleotides
HSERO_RS00800: HSERO_RS00800 - hypothetical protein, at 167,684 to 168,133
_RS00800
HSERO_RS00805: HSERO_RS00805 - preprotein translocase subunit SecB, at 168,251 to 168,745
_RS00805
HSERO_RS00810: HSERO_RS00810 - glutaredoxin, at 168,798 to 169,058
_RS00810
HSERO_RS00815: HSERO_RS00815 - sulfurtransferase, at 169,055 to 169,468
_RS00815
HSERO_RS00820: HSERO_RS00820 - phosphoglyceromutase, at 169,619 to 170,365
_RS00820
HSERO_RS00825: HSERO_RS00825 - protease, at 170,458 to 171,870
_RS00825
Position (kb) 169
170 Strain fitness (log2 ratio) -2
-1
0
1 at 168.083 kb on - strand, within HSERO_RS00800 at 168.242 kb on - strand at 168.291 kb on - strand at 168.330 kb on - strand, within HSERO_RS00805 at 168.435 kb on - strand, within HSERO_RS00805 at 168.751 kb on + strand at 168.776 kb on + strand at 168.776 kb on + strand at 168.787 kb on - strand at 168.888 kb on - strand, within HSERO_RS00810 at 169.212 kb on + strand, within HSERO_RS00815 at 169.410 kb on + strand, within HSERO_RS00815 at 169.423 kb on - strand, within HSERO_RS00815 at 169.535 kb on - strand at 169.535 kb on - strand at 169.537 kb on + strand at 169.537 kb on + strand at 169.545 kb on - strand at 170.374 kb on + strand at 170.382 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 168,083 - HSERO_RS00800 0.89 -2.5 168,242 - -0.1 168,291 - -0.2 168,330 - HSERO_RS00805 0.16 -2.0 168,435 - HSERO_RS00805 0.37 -0.1 168,751 + -0.4 168,776 + -0.9 168,776 + -0.5 168,787 - -0.5 168,888 - HSERO_RS00810 0.34 -0.4 169,212 + HSERO_RS00815 0.38 -1.6 169,410 + HSERO_RS00815 0.86 -0.5 169,423 - HSERO_RS00815 0.89 +0.1 169,535 - +1.1 169,535 - -1.3 169,537 + +0.6 169,537 + -0.2 169,545 - -1.5 170,374 + +1.1 170,382 - -0.4
Or see this region's nucleotide sequence