Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS00795 and HSERO_RS00800 are separated by 12 nucleotides HSERO_RS00800 and HSERO_RS00805 are separated by 117 nucleotides HSERO_RS00805 and HSERO_RS00810 are separated by 52 nucleotides HSERO_RS00810 and HSERO_RS00815 overlap by 4 nucleotides
HSERO_RS00795: HSERO_RS00795 - glycerol-3-phosphate dehydrogenase, at 166,667 to 167,671
_RS00795
HSERO_RS00800: HSERO_RS00800 - hypothetical protein, at 167,684 to 168,133
_RS00800
HSERO_RS00805: HSERO_RS00805 - preprotein translocase subunit SecB, at 168,251 to 168,745
_RS00805
HSERO_RS00810: HSERO_RS00810 - glutaredoxin, at 168,798 to 169,058
_RS00810
HSERO_RS00815: HSERO_RS00815 - sulfurtransferase, at 169,055 to 169,468
_RS00815
Position (kb) 167
168
169 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 166.972 kb on - strand, within HSERO_RS00795 at 167.053 kb on + strand, within HSERO_RS00795 at 167.256 kb on - strand, within HSERO_RS00795 at 167.347 kb on - strand, within HSERO_RS00795 at 167.592 kb on + strand at 167.827 kb on - strand, within HSERO_RS00800 at 167.869 kb on + strand, within HSERO_RS00800 at 167.901 kb on + strand, within HSERO_RS00800 at 167.909 kb on - strand, within HSERO_RS00800 at 167.925 kb on + strand, within HSERO_RS00800 at 167.988 kb on + strand, within HSERO_RS00800 at 167.996 kb on - strand, within HSERO_RS00800 at 168.083 kb on - strand, within HSERO_RS00800 at 168.242 kb on - strand at 168.291 kb on - strand at 168.330 kb on - strand, within HSERO_RS00805 at 168.435 kb on - strand, within HSERO_RS00805 at 168.751 kb on + strand at 168.776 kb on + strand at 168.776 kb on + strand at 168.787 kb on - strand at 168.888 kb on - strand, within HSERO_RS00810
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 166,972 - HSERO_RS00795 0.30 +0.1 167,053 + HSERO_RS00795 0.38 -2.8 167,256 - HSERO_RS00795 0.59 -0.4 167,347 - HSERO_RS00795 0.68 -1.5 167,592 + -2.6 167,827 - HSERO_RS00800 0.32 -1.5 167,869 + HSERO_RS00800 0.41 -1.0 167,901 + HSERO_RS00800 0.48 -2.1 167,909 - HSERO_RS00800 0.50 +0.6 167,925 + HSERO_RS00800 0.54 -1.4 167,988 + HSERO_RS00800 0.68 -0.8 167,996 - HSERO_RS00800 0.69 +0.5 168,083 - HSERO_RS00800 0.89 -2.5 168,242 - -0.1 168,291 - -0.2 168,330 - HSERO_RS00805 0.16 -2.0 168,435 - HSERO_RS00805 0.37 -0.1 168,751 + -0.4 168,776 + -0.9 168,776 + -0.5 168,787 - -0.5 168,888 - HSERO_RS00810 0.34 -0.4
Or see this region's nucleotide sequence