Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS00785 and HSERO_RS00790 are separated by 437 nucleotides HSERO_RS00790 and HSERO_RS00795 are separated by 131 nucleotides HSERO_RS00795 and HSERO_RS00800 are separated by 12 nucleotides HSERO_RS00800 and HSERO_RS00805 are separated by 117 nucleotides
HSERO_RS00785: HSERO_RS00785 - acetyltransferase, at 165,253 to 165,843
_RS00785
HSERO_RS00790: HSERO_RS00790 - hypothetical protein, at 166,281 to 166,535
_RS00790
HSERO_RS00795: HSERO_RS00795 - glycerol-3-phosphate dehydrogenase, at 166,667 to 167,671
_RS00795
HSERO_RS00800: HSERO_RS00800 - hypothetical protein, at 167,684 to 168,133
_RS00800
HSERO_RS00805: HSERO_RS00805 - preprotein translocase subunit SecB, at 168,251 to 168,745
_RS00805
Position (kb) 166
167
168 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 165.709 kb on - strand, within HSERO_RS00785 at 165.712 kb on + strand, within HSERO_RS00785 at 165.728 kb on - strand, within HSERO_RS00785 at 165.819 kb on - strand at 165.882 kb on - strand at 165.908 kb on + strand at 165.908 kb on - strand at 165.908 kb on - strand at 165.916 kb on - strand at 166.123 kb on - strand at 166.134 kb on - strand at 166.388 kb on + strand, within HSERO_RS00790 at 166.534 kb on + strand at 166.616 kb on + strand at 166.972 kb on - strand, within HSERO_RS00795 at 167.053 kb on + strand, within HSERO_RS00795 at 167.256 kb on - strand, within HSERO_RS00795 at 167.347 kb on - strand, within HSERO_RS00795 at 167.592 kb on + strand at 167.827 kb on - strand, within HSERO_RS00800 at 167.869 kb on + strand, within HSERO_RS00800 at 167.901 kb on + strand, within HSERO_RS00800 at 167.909 kb on - strand, within HSERO_RS00800 at 167.925 kb on + strand, within HSERO_RS00800 at 167.988 kb on + strand, within HSERO_RS00800 at 167.996 kb on - strand, within HSERO_RS00800 at 168.083 kb on - strand, within HSERO_RS00800 at 168.242 kb on - strand at 168.291 kb on - strand at 168.330 kb on - strand, within HSERO_RS00805 at 168.435 kb on - strand, within HSERO_RS00805
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 165,709 - HSERO_RS00785 0.77 -0.6 165,712 + HSERO_RS00785 0.78 +0.2 165,728 - HSERO_RS00785 0.80 +2.2 165,819 - -0.2 165,882 - +0.2 165,908 + -0.2 165,908 - +0.7 165,908 - -0.7 165,916 - +0.2 166,123 - +1.1 166,134 - +0.1 166,388 + HSERO_RS00790 0.42 -0.0 166,534 + -0.6 166,616 + +1.2 166,972 - HSERO_RS00795 0.30 +0.1 167,053 + HSERO_RS00795 0.38 -2.8 167,256 - HSERO_RS00795 0.59 -0.4 167,347 - HSERO_RS00795 0.68 -1.5 167,592 + -2.6 167,827 - HSERO_RS00800 0.32 -1.5 167,869 + HSERO_RS00800 0.41 -1.0 167,901 + HSERO_RS00800 0.48 -2.1 167,909 - HSERO_RS00800 0.50 +0.6 167,925 + HSERO_RS00800 0.54 -1.4 167,988 + HSERO_RS00800 0.68 -0.8 167,996 - HSERO_RS00800 0.69 +0.5 168,083 - HSERO_RS00800 0.89 -2.5 168,242 - -0.1 168,291 - -0.2 168,330 - HSERO_RS00805 0.16 -2.0 168,435 - HSERO_RS00805 0.37 -0.1
Or see this region's nucleotide sequence