Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS00425 and HSERO_RS00430 are separated by 347 nucleotides HSERO_RS00430 and HSERO_RS00435 are separated by 38 nucleotides
HSERO_RS00425: HSERO_RS00425 - ammonia channel protein, at 99,406 to 100,938
_RS00425
HSERO_RS00430: HSERO_RS00430 - glutamate--cysteine ligase, at 101,286 to 102,587
_RS00430
HSERO_RS00435: HSERO_RS00435 - glutathione synthetase, at 102,626 to 103,576
_RS00435
Position (kb) 101
102
103 Strain fitness (log2 ratio) -2
-1
0
1 at 100.378 kb on + strand, within HSERO_RS00425 at 100.433 kb on - strand, within HSERO_RS00425 at 100.616 kb on + strand, within HSERO_RS00425 at 100.675 kb on + strand, within HSERO_RS00425 at 100.675 kb on + strand, within HSERO_RS00425 at 100.773 kb on + strand, within HSERO_RS00425 at 100.793 kb on - strand at 100.795 kb on + strand at 100.795 kb on + strand at 100.905 kb on - strand at 100.940 kb on - strand at 100.970 kb on - strand at 101.072 kb on + strand at 101.739 kb on - strand, within HSERO_RS00430 at 101.773 kb on + strand, within HSERO_RS00430 at 102.126 kb on + strand, within HSERO_RS00430 at 102.256 kb on + strand, within HSERO_RS00430 at 102.559 kb on + strand at 102.608 kb on + strand at 102.613 kb on - strand at 102.615 kb on + strand at 102.616 kb on - strand at 102.661 kb on + strand at 102.843 kb on + strand, within HSERO_RS00435 at 102.843 kb on + strand, within HSERO_RS00435 at 103.248 kb on + strand, within HSERO_RS00435 at 103.249 kb on - strand, within HSERO_RS00435 at 103.455 kb on + strand, within HSERO_RS00435 at 103.580 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 100,378 + HSERO_RS00425 0.63 -1.6 100,433 - HSERO_RS00425 0.67 +1.1 100,616 + HSERO_RS00425 0.79 -0.7 100,675 + HSERO_RS00425 0.83 -0.1 100,675 + HSERO_RS00425 0.83 -1.2 100,773 + HSERO_RS00425 0.89 +0.1 100,793 - +0.3 100,795 + +1.4 100,795 + -0.2 100,905 - +1.1 100,940 - +0.5 100,970 - +0.3 101,072 + +0.5 101,739 - HSERO_RS00430 0.35 -0.3 101,773 + HSERO_RS00430 0.37 +0.1 102,126 + HSERO_RS00430 0.65 -0.9 102,256 + HSERO_RS00430 0.75 -2.1 102,559 + -0.9 102,608 + -0.8 102,613 - -0.3 102,615 + -0.6 102,616 - -0.6 102,661 + -0.4 102,843 + HSERO_RS00435 0.23 +0.5 102,843 + HSERO_RS00435 0.23 -0.2 103,248 + HSERO_RS00435 0.65 -0.8 103,249 - HSERO_RS00435 0.66 +1.4 103,455 + HSERO_RS00435 0.87 -0.2 103,580 - -0.3
Or see this region's nucleotide sequence