Strain Fitness in Marinobacter adhaerens HP15 around HP15_96

Experiment: Control growth in Pro99_seawater

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_95 and HP15_96 are separated by 217 nucleotidesHP15_96 and HP15_97 are separated by 4 nucleotides HP15_95: HP15_95 - cation diffusion facilitator family transporter, at 98,137 to 98,925 _95 HP15_96: HP15_96 - lipoprotein signal peptidase, at 99,143 to 99,658 _96 HP15_97: HP15_97 - cation efflux system protein, at 99,663 to 100,559 _97 Position (kb) 99 100Strain fitness (log2 ratio) -3 -2 -1 0 1at 98.145 kb on + strandat 98.245 kb on + strand, within HP15_95at 98.304 kb on - strand, within HP15_95at 98.342 kb on + strand, within HP15_95at 98.411 kb on + strand, within HP15_95at 98.411 kb on + strand, within HP15_95at 98.414 kb on - strand, within HP15_95at 98.427 kb on + strand, within HP15_95at 98.429 kb on - strand, within HP15_95at 98.477 kb on - strand, within HP15_95at 98.550 kb on - strand, within HP15_95at 98.576 kb on + strand, within HP15_95at 98.621 kb on + strand, within HP15_95at 98.635 kb on - strand, within HP15_95at 98.666 kb on - strand, within HP15_95at 98.812 kb on + strand, within HP15_95at 98.820 kb on - strand, within HP15_95at 98.820 kb on - strand, within HP15_95at 98.826 kb on - strand, within HP15_95at 98.852 kb on - strandat 98.904 kb on - strandat 98.962 kb on + strandat 98.970 kb on - strandat 98.970 kb on - strandat 98.999 kb on + strandat 98.999 kb on + strandat 99.007 kb on - strandat 99.007 kb on - strandat 99.098 kb on + strandat 99.113 kb on + strandat 99.178 kb on - strandat 99.180 kb on - strandat 99.248 kb on + strand, within HP15_96at 99.254 kb on - strand, within HP15_96at 99.255 kb on - strand, within HP15_96at 99.365 kb on - strand, within HP15_96at 99.368 kb on + strand, within HP15_96at 99.399 kb on + strand, within HP15_96at 99.404 kb on + strand, within HP15_96at 99.422 kb on - strand, within HP15_96at 99.422 kb on - strand, within HP15_96at 99.521 kb on + strand, within HP15_96at 99.552 kb on + strand, within HP15_96at 99.560 kb on - strand, within HP15_96at 99.687 kb on - strandat 99.699 kb on + strandat 99.701 kb on + strandat 99.701 kb on + strandat 99.709 kb on - strandat 99.752 kb on - strandat 99.793 kb on - strand, within HP15_97at 99.793 kb on - strand, within HP15_97at 99.836 kb on + strand, within HP15_97at 99.885 kb on - strand, within HP15_97at 99.972 kb on + strand, within HP15_97at 100.029 kb on - strand, within HP15_97at 100.034 kb on - strand, within HP15_97at 100.069 kb on - strand, within HP15_97at 100.069 kb on - strand, within HP15_97at 100.084 kb on - strand, within HP15_97at 100.139 kb on - strand, within HP15_97at 100.219 kb on + strand, within HP15_97at 100.270 kb on - strand, within HP15_97at 100.289 kb on + strand, within HP15_97at 100.289 kb on + strand, within HP15_97at 100.289 kb on + strand, within HP15_97at 100.289 kb on + strand, within HP15_97at 100.289 kb on + strand, within HP15_97at 100.289 kb on + strand, within HP15_97at 100.289 kb on + strand, within HP15_97at 100.297 kb on + strand, within HP15_97at 100.297 kb on + strand, within HP15_97at 100.331 kb on - strand, within HP15_97at 100.464 kb on + strand, within HP15_97at 100.513 kb on + strandat 100.530 kb on + strandat 100.536 kb on - strandat 100.538 kb on - strandat 100.637 kb on - strandat 100.653 kb on + strandat 100.653 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater
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98,145 + -3.5
98,245 + HP15_95 0.14 +0.1
98,304 - HP15_95 0.21 -0.4
98,342 + HP15_95 0.26 +0.3
98,411 + HP15_95 0.35 +0.2
98,411 + HP15_95 0.35 -1.4
98,414 - HP15_95 0.35 -0.0
98,427 + HP15_95 0.37 -3.4
98,429 - HP15_95 0.37 -0.4
98,477 - HP15_95 0.43 -0.9
98,550 - HP15_95 0.52 -0.3
98,576 + HP15_95 0.56 -0.4
98,621 + HP15_95 0.61 +0.1
98,635 - HP15_95 0.63 -3.3
98,666 - HP15_95 0.67 -3.3
98,812 + HP15_95 0.86 -0.0
98,820 - HP15_95 0.87 -1.9
98,820 - HP15_95 0.87 -0.9
98,826 - HP15_95 0.87 -2.3
98,852 - -3.6
98,904 - -1.0
98,962 + +0.3
98,970 - +0.1
98,970 - +0.6
98,999 + -3.0
98,999 + +0.0
99,007 - +0.7
99,007 - -2.2
99,098 + +0.7
99,113 + -0.0
99,178 - +0.2
99,180 - +0.9
99,248 + HP15_96 0.20 +0.4
99,254 - HP15_96 0.22 -2.3
99,255 - HP15_96 0.22 +0.2
99,365 - HP15_96 0.43 -0.1
99,368 + HP15_96 0.44 +0.9
99,399 + HP15_96 0.50 +0.4
99,404 + HP15_96 0.51 -2.5
99,422 - HP15_96 0.54 +0.3
99,422 - HP15_96 0.54 -3.2
99,521 + HP15_96 0.73 -2.8
99,552 + HP15_96 0.79 -2.4
99,560 - HP15_96 0.81 +0.5
99,687 - +0.7
99,699 + +0.2
99,701 + -0.8
99,701 + +0.1
99,709 - -1.5
99,752 - -2.0
99,793 - HP15_97 0.14 -1.9
99,793 - HP15_97 0.14 +0.2
99,836 + HP15_97 0.19 -0.1
99,885 - HP15_97 0.25 -3.6
99,972 + HP15_97 0.34 +0.4
100,029 - HP15_97 0.41 -3.2
100,034 - HP15_97 0.41 -2.7
100,069 - HP15_97 0.45 +0.1
100,069 - HP15_97 0.45 -3.2
100,084 - HP15_97 0.47 +1.5
100,139 - HP15_97 0.53 -2.5
100,219 + HP15_97 0.62 -1.4
100,270 - HP15_97 0.68 -3.0
100,289 + HP15_97 0.70 +1.1
100,289 + HP15_97 0.70 +0.5
100,289 + HP15_97 0.70 +0.9
100,289 + HP15_97 0.70 +0.8
100,289 + HP15_97 0.70 -1.9
100,289 + HP15_97 0.70 -0.9
100,289 + HP15_97 0.70 -2.9
100,297 + HP15_97 0.71 +0.3
100,297 + HP15_97 0.71 +0.0
100,331 - HP15_97 0.74 -3.1
100,464 + HP15_97 0.89 +0.2
100,513 + -3.0
100,530 + +0.3
100,536 - +0.1
100,538 - -0.8
100,637 - +1.0
100,653 + +1.2
100,653 + +0.3

Or see this region's nucleotide sequence