Experiment: Control growth in Pro99_seawater
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_933 and HP15_934 are separated by 12 nucleotides HP15_934 and HP15_935 are separated by 24 nucleotides HP15_935 and HP15_936 are separated by 105 nucleotides
HP15_933: HP15_933 - transporter, hydrophobe/amphiphile efflux-1 (HAE1) family, at 946,787 to 949,891
_933
HP15_934: HP15_934 - extradiol ring-cleavage dioxygenase, class III enzyme, subunit B, at 949,904 to 950,677
_934
HP15_935: HP15_935 - DoxD-like family protein, at 950,702 to 951,142
_935
HP15_936: HP15_936 - transcriptional regulator, LysR family protein, at 951,248 to 952,138
_936
Position (kb) 949
950
951 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 948.977 kb on + strand, within HP15_933 at 948.978 kb on - strand, within HP15_933 at 948.983 kb on + strand, within HP15_933 at 948.990 kb on + strand, within HP15_933 at 949.028 kb on + strand, within HP15_933 at 949.085 kb on - strand, within HP15_933 at 949.112 kb on - strand, within HP15_933 at 949.119 kb on + strand, within HP15_933 at 949.127 kb on - strand, within HP15_933 at 949.189 kb on + strand, within HP15_933 at 949.254 kb on + strand, within HP15_933 at 949.273 kb on - strand, within HP15_933 at 949.333 kb on - strand, within HP15_933 at 949.529 kb on - strand, within HP15_933 at 949.553 kb on + strand, within HP15_933 at 949.559 kb on + strand, within HP15_933 at 949.691 kb on + strand at 949.699 kb on - strand at 949.701 kb on - strand at 949.787 kb on - strand at 949.932 kb on + strand at 949.940 kb on - strand at 950.087 kb on - strand, within HP15_934 at 950.110 kb on + strand, within HP15_934 at 950.146 kb on + strand, within HP15_934 at 950.272 kb on - strand, within HP15_934 at 950.399 kb on - strand, within HP15_934 at 950.411 kb on - strand, within HP15_934 at 950.414 kb on + strand, within HP15_934 at 950.471 kb on + strand, within HP15_934 at 950.585 kb on + strand, within HP15_934 at 950.645 kb on + strand at 951.000 kb on - strand, within HP15_935 at 951.005 kb on - strand, within HP15_935 at 951.074 kb on + strand, within HP15_935 at 951.309 kb on - strand at 951.321 kb on + strand at 951.321 kb on + strand at 951.328 kb on - strand at 951.329 kb on - strand at 951.329 kb on - strand at 951.381 kb on + strand, within HP15_936 at 951.381 kb on + strand, within HP15_936 at 951.389 kb on - strand, within HP15_936 at 951.533 kb on - strand, within HP15_936 at 951.608 kb on - strand, within HP15_936 at 951.626 kb on - strand, within HP15_936
Per-strain Table
Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater remove 948,977 + HP15_933 0.71 +1.0 948,978 - HP15_933 0.71 +0.3 948,983 + HP15_933 0.71 -0.8 948,990 + HP15_933 0.71 -3.3 949,028 + HP15_933 0.72 -0.1 949,085 - HP15_933 0.74 +0.9 949,112 - HP15_933 0.75 -0.3 949,119 + HP15_933 0.75 +0.6 949,127 - HP15_933 0.75 -3.1 949,189 + HP15_933 0.77 +0.0 949,254 + HP15_933 0.79 -3.3 949,273 - HP15_933 0.80 +0.4 949,333 - HP15_933 0.82 -1.6 949,529 - HP15_933 0.88 +0.5 949,553 + HP15_933 0.89 -3.2 949,559 + HP15_933 0.89 -0.7 949,691 + -2.9 949,699 - -4.1 949,701 - +0.8 949,787 - -3.3 949,932 + +0.4 949,940 - +0.2 950,087 - HP15_934 0.24 -2.9 950,110 + HP15_934 0.27 +0.3 950,146 + HP15_934 0.31 -2.4 950,272 - HP15_934 0.48 -4.1 950,399 - HP15_934 0.64 +0.1 950,411 - HP15_934 0.66 -0.5 950,414 + HP15_934 0.66 +1.3 950,471 + HP15_934 0.73 +0.1 950,585 + HP15_934 0.88 +0.6 950,645 + +0.4 951,000 - HP15_935 0.68 +0.2 951,005 - HP15_935 0.69 -2.8 951,074 + HP15_935 0.84 -2.9 951,309 - +0.3 951,321 + -2.9 951,321 + -0.0 951,328 - -0.0 951,329 - -3.8 951,329 - +0.1 951,381 + HP15_936 0.15 -0.0 951,381 + HP15_936 0.15 +0.4 951,389 - HP15_936 0.16 -0.6 951,533 - HP15_936 0.32 +0.7 951,608 - HP15_936 0.40 -3.3 951,626 - HP15_936 0.42 +0.0
Or see this region's nucleotide sequence