Experiment: Control growth in Pro99_seawater
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_92 and HP15_93 are separated by 26 nucleotides HP15_93 and HP15_94 are separated by 42 nucleotides HP15_94 and HP15_95 are separated by 75 nucleotides HP15_95 and HP15_96 are separated by 217 nucleotides HP15_96 and HP15_97 are separated by 4 nucleotides
HP15_92: HP15_92 - DSBA oxidoreductase, at 96,674 to 97,312
_92
HP15_93: HP15_93 - hypothetical protein, at 97,339 to 97,446
_93
HP15_94: HP15_94 - sodium: bile acid symporter family protein-like protein, at 97,489 to 98,061
_94
HP15_95: HP15_95 - cation diffusion facilitator family transporter, at 98,137 to 98,925
_95
HP15_96: HP15_96 - lipoprotein signal peptidase, at 99,143 to 99,658
_96
HP15_97: HP15_97 - cation efflux system protein, at 99,663 to 100,559
_97
Position (kb) 98
99 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 97.158 kb on + strand, within HP15_92 at 97.305 kb on - strand at 97.305 kb on - strand at 97.310 kb on + strand at 97.336 kb on + strand at 97.429 kb on + strand, within HP15_93 at 97.457 kb on + strand at 97.457 kb on + strand at 97.465 kb on - strand at 97.494 kb on - strand at 97.576 kb on + strand, within HP15_94 at 97.649 kb on - strand, within HP15_94 at 97.649 kb on - strand, within HP15_94 at 97.697 kb on - strand, within HP15_94 at 97.746 kb on - strand, within HP15_94 at 97.796 kb on - strand, within HP15_94 at 97.796 kb on - strand, within HP15_94 at 97.915 kb on + strand, within HP15_94 at 97.949 kb on + strand, within HP15_94 at 97.957 kb on + strand, within HP15_94 at 97.957 kb on + strand, within HP15_94 at 97.957 kb on + strand, within HP15_94 at 97.959 kb on + strand, within HP15_94 at 97.965 kb on - strand, within HP15_94 at 97.965 kb on - strand, within HP15_94 at 97.967 kb on - strand, within HP15_94 at 97.967 kb on - strand, within HP15_94 at 97.967 kb on - strand, within HP15_94 at 97.985 kb on - strand, within HP15_94 at 98.027 kb on + strand at 98.027 kb on + strand at 98.027 kb on + strand at 98.027 kb on + strand at 98.035 kb on - strand at 98.065 kb on - strand at 98.067 kb on + strand at 98.067 kb on + strand at 98.075 kb on - strand at 98.134 kb on - strand at 98.145 kb on + strand at 98.245 kb on + strand, within HP15_95 at 98.304 kb on - strand, within HP15_95 at 98.342 kb on + strand, within HP15_95 at 98.411 kb on + strand, within HP15_95 at 98.411 kb on + strand, within HP15_95 at 98.414 kb on - strand, within HP15_95 at 98.427 kb on + strand, within HP15_95 at 98.429 kb on - strand, within HP15_95 at 98.477 kb on - strand, within HP15_95 at 98.550 kb on - strand, within HP15_95 at 98.576 kb on + strand, within HP15_95 at 98.621 kb on + strand, within HP15_95 at 98.635 kb on - strand, within HP15_95 at 98.666 kb on - strand, within HP15_95 at 98.812 kb on + strand, within HP15_95 at 98.820 kb on - strand, within HP15_95 at 98.820 kb on - strand, within HP15_95 at 98.826 kb on - strand, within HP15_95 at 98.852 kb on - strand at 98.904 kb on - strand at 98.962 kb on + strand at 98.970 kb on - strand at 98.970 kb on - strand at 98.999 kb on + strand at 98.999 kb on + strand at 99.007 kb on - strand at 99.007 kb on - strand at 99.098 kb on + strand at 99.113 kb on + strand at 99.178 kb on - strand at 99.180 kb on - strand at 99.248 kb on + strand, within HP15_96 at 99.254 kb on - strand, within HP15_96 at 99.255 kb on - strand, within HP15_96 at 99.365 kb on - strand, within HP15_96 at 99.368 kb on + strand, within HP15_96 at 99.399 kb on + strand, within HP15_96 at 99.404 kb on + strand, within HP15_96 at 99.422 kb on - strand, within HP15_96 at 99.422 kb on - strand, within HP15_96 at 99.521 kb on + strand, within HP15_96 at 99.552 kb on + strand, within HP15_96 at 99.560 kb on - strand, within HP15_96 at 99.687 kb on - strand at 99.699 kb on + strand at 99.701 kb on + strand at 99.701 kb on + strand at 99.709 kb on - strand at 99.752 kb on - strand at 99.793 kb on - strand, within HP15_97 at 99.793 kb on - strand, within HP15_97 at 99.836 kb on + strand, within HP15_97 at 99.885 kb on - strand, within HP15_97
Per-strain Table
Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater remove 97,158 + HP15_92 0.76 -0.2 97,305 - +0.1 97,305 - -0.2 97,310 + -2.5 97,336 + +0.2 97,429 + HP15_93 0.83 -3.2 97,457 + +0.4 97,457 + +0.7 97,465 - +1.6 97,494 - +0.7 97,576 + HP15_94 0.15 +0.0 97,649 - HP15_94 0.28 +0.4 97,649 - HP15_94 0.28 +0.4 97,697 - HP15_94 0.36 +0.3 97,746 - HP15_94 0.45 +0.2 97,796 - HP15_94 0.54 +0.9 97,796 - HP15_94 0.54 -4.2 97,915 + HP15_94 0.74 -0.5 97,949 + HP15_94 0.80 -2.1 97,957 + HP15_94 0.82 +0.3 97,957 + HP15_94 0.82 -0.6 97,957 + HP15_94 0.82 +1.3 97,959 + HP15_94 0.82 +0.7 97,965 - HP15_94 0.83 -1.4 97,965 - HP15_94 0.83 +0.5 97,967 - HP15_94 0.83 -0.7 97,967 - HP15_94 0.83 -1.5 97,967 - HP15_94 0.83 +0.3 97,985 - HP15_94 0.87 +0.4 98,027 + -2.8 98,027 + -3.3 98,027 + +0.4 98,027 + +0.2 98,035 - -0.2 98,065 - -1.7 98,067 + -1.6 98,067 + -3.9 98,075 - -2.1 98,134 - -1.8 98,145 + -3.5 98,245 + HP15_95 0.14 +0.1 98,304 - HP15_95 0.21 -0.4 98,342 + HP15_95 0.26 +0.3 98,411 + HP15_95 0.35 +0.2 98,411 + HP15_95 0.35 -1.4 98,414 - HP15_95 0.35 -0.0 98,427 + HP15_95 0.37 -3.4 98,429 - HP15_95 0.37 -0.4 98,477 - HP15_95 0.43 -0.9 98,550 - HP15_95 0.52 -0.3 98,576 + HP15_95 0.56 -0.4 98,621 + HP15_95 0.61 +0.1 98,635 - HP15_95 0.63 -3.3 98,666 - HP15_95 0.67 -3.3 98,812 + HP15_95 0.86 -0.0 98,820 - HP15_95 0.87 -1.9 98,820 - HP15_95 0.87 -0.9 98,826 - HP15_95 0.87 -2.3 98,852 - -3.6 98,904 - -1.0 98,962 + +0.3 98,970 - +0.1 98,970 - +0.6 98,999 + -3.0 98,999 + +0.0 99,007 - +0.7 99,007 - -2.2 99,098 + +0.7 99,113 + -0.0 99,178 - +0.2 99,180 - +0.9 99,248 + HP15_96 0.20 +0.4 99,254 - HP15_96 0.22 -2.3 99,255 - HP15_96 0.22 +0.2 99,365 - HP15_96 0.43 -0.1 99,368 + HP15_96 0.44 +0.9 99,399 + HP15_96 0.50 +0.4 99,404 + HP15_96 0.51 -2.5 99,422 - HP15_96 0.54 +0.3 99,422 - HP15_96 0.54 -3.2 99,521 + HP15_96 0.73 -2.8 99,552 + HP15_96 0.79 -2.4 99,560 - HP15_96 0.81 +0.5 99,687 - +0.7 99,699 + +0.2 99,701 + -0.8 99,701 + +0.1 99,709 - -1.5 99,752 - -2.0 99,793 - HP15_97 0.14 -1.9 99,793 - HP15_97 0.14 +0.2 99,836 + HP15_97 0.19 -0.1 99,885 - HP15_97 0.25 -3.6
Or see this region's nucleotide sequence