Experiment: Control growth in Pro99_seawater
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_810 and HP15_811 are separated by 306 nucleotides HP15_811 and HP15_812 are separated by 44 nucleotides HP15_812 and HP15_813 are separated by 74 nucleotides
HP15_810: HP15_810 - fatty acyl-CoA reductase 1, at 827,536 to 829,071
_810
HP15_811: HP15_811 - acetyl-CoA synthetase, at 829,378 to 831,327
_811
HP15_812: HP15_812 - two component transcriptional regulator, LuxR family, at 831,372 to 832,037
_812
HP15_813: HP15_813 - D-isomer specific 2-hydroxyacid dehydrogenase family protein, at 832,112 to 833,281
_813
Position (kb) 829
830
831
832 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 828.390 kb on + strand, within HP15_810 at 828.719 kb on - strand, within HP15_810 at 828.730 kb on + strand, within HP15_810 at 828.745 kb on + strand, within HP15_810 at 828.848 kb on + strand, within HP15_810 at 828.906 kb on + strand, within HP15_810 at 828.908 kb on - strand, within HP15_810 at 828.975 kb on - strand at 829.018 kb on - strand at 829.018 kb on - strand at 829.075 kb on + strand at 829.239 kb on + strand at 829.247 kb on - strand at 829.305 kb on + strand at 829.313 kb on - strand at 829.406 kb on + strand at 829.990 kb on + strand, within HP15_811 at 829.990 kb on + strand, within HP15_811 at 830.203 kb on + strand, within HP15_811 at 830.280 kb on + strand, within HP15_811 at 830.329 kb on - strand, within HP15_811 at 830.430 kb on + strand, within HP15_811 at 830.439 kb on + strand, within HP15_811 at 830.623 kb on - strand, within HP15_811 at 830.759 kb on - strand, within HP15_811 at 830.794 kb on + strand, within HP15_811 at 830.935 kb on + strand, within HP15_811 at 832.138 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater remove 828,390 + HP15_810 0.56 +0.2 828,719 - HP15_810 0.77 +0.3 828,730 + HP15_810 0.78 +0.7 828,745 + HP15_810 0.79 -0.0 828,848 + HP15_810 0.85 +0.5 828,906 + HP15_810 0.89 -0.8 828,908 - HP15_810 0.89 +0.6 828,975 - -3.0 829,018 - +0.1 829,018 - -2.1 829,075 + -1.5 829,239 + +0.8 829,247 - +0.1 829,305 + -1.4 829,313 - -1.1 829,406 + -1.9 829,990 + HP15_811 0.31 -2.9 829,990 + HP15_811 0.31 -2.7 830,203 + HP15_811 0.42 -2.1 830,280 + HP15_811 0.46 -3.7 830,329 - HP15_811 0.49 +1.1 830,430 + HP15_811 0.54 -4.1 830,439 + HP15_811 0.54 -4.6 830,623 - HP15_811 0.64 +2.1 830,759 - HP15_811 0.71 +2.1 830,794 + HP15_811 0.73 -2.7 830,935 + HP15_811 0.80 -3.4 832,138 - +1.3
Or see this region's nucleotide sequence