Experiment: Control growth in Pro99_seawater
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_792 and HP15_793 are separated by 136 nucleotides HP15_793 and HP15_794 are separated by 32 nucleotides HP15_794 and HP15_795 are separated by 143 nucleotides HP15_795 and HP15_796 are separated by 78 nucleotides
HP15_792: HP15_792 - nucleoside triphosphate pyrophosphohydrolase, at 806,654 to 807,511
_792
HP15_793: HP15_793 - conserved hypothetical protein, at 807,648 to 807,992
_793
HP15_794: HP15_794 - conserved hypothetical protein, at 808,025 to 808,258
_794
HP15_795: HP15_795 - phosphoenolpyruvate carboxylase, at 808,402 to 811,008
_795
HP15_796: HP15_796 - signal transduction protein, at 811,087 to 812,457
_796
Position (kb) 808
809
810
811
812 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 807.475 kb on + strand at 807.510 kb on + strand at 807.822 kb on - strand, within HP15_793 at 808.079 kb on + strand, within HP15_794 at 808.087 kb on - strand, within HP15_794 at 808.087 kb on - strand, within HP15_794 at 808.103 kb on + strand, within HP15_794 at 808.186 kb on + strand, within HP15_794 at 808.279 kb on + strand at 808.365 kb on + strand at 808.449 kb on + strand at 808.664 kb on - strand, within HP15_795 at 808.768 kb on - strand, within HP15_795 at 808.843 kb on - strand, within HP15_795 at 808.942 kb on - strand, within HP15_795 at 809.170 kb on + strand, within HP15_795 at 809.225 kb on + strand, within HP15_795 at 809.282 kb on + strand, within HP15_795 at 809.290 kb on + strand, within HP15_795 at 809.345 kb on + strand, within HP15_795 at 809.348 kb on - strand, within HP15_795 at 809.458 kb on + strand, within HP15_795 at 809.599 kb on - strand, within HP15_795 at 809.726 kb on + strand, within HP15_795 at 809.765 kb on + strand, within HP15_795 at 809.771 kb on + strand, within HP15_795 at 809.803 kb on - strand, within HP15_795 at 809.806 kb on - strand, within HP15_795 at 809.904 kb on - strand, within HP15_795 at 809.919 kb on + strand, within HP15_795 at 809.927 kb on - strand, within HP15_795 at 810.076 kb on + strand, within HP15_795 at 810.150 kb on - strand, within HP15_795 at 810.322 kb on + strand, within HP15_795 at 810.345 kb on + strand, within HP15_795 at 810.421 kb on - strand, within HP15_795 at 810.528 kb on - strand, within HP15_795 at 810.574 kb on - strand, within HP15_795 at 810.585 kb on + strand, within HP15_795 at 810.669 kb on + strand, within HP15_795 at 810.669 kb on + strand, within HP15_795 at 810.669 kb on + strand, within HP15_795 at 810.669 kb on + strand, within HP15_795 at 810.674 kb on + strand, within HP15_795 at 810.677 kb on - strand, within HP15_795 at 810.677 kb on - strand, within HP15_795 at 810.698 kb on + strand, within HP15_795 at 810.706 kb on - strand, within HP15_795 at 810.848 kb on - strand at 810.858 kb on + strand at 811.211 kb on + strand at 811.211 kb on + strand at 811.219 kb on - strand at 811.219 kb on - strand at 811.384 kb on - strand, within HP15_796 at 811.698 kb on + strand, within HP15_796 at 811.715 kb on - strand, within HP15_796 at 811.816 kb on - strand, within HP15_796 at 811.816 kb on - strand, within HP15_796 at 811.843 kb on + strand, within HP15_796 at 811.846 kb on - strand, within HP15_796 at 811.868 kb on + strand, within HP15_796 at 811.920 kb on + strand, within HP15_796 at 811.921 kb on + strand, within HP15_796 at 811.929 kb on - strand, within HP15_796 at 811.957 kb on - strand, within HP15_796
Per-strain Table
Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater remove 807,475 + +0.3 807,510 + +0.5 807,822 - HP15_793 0.50 +0.3 808,079 + HP15_794 0.23 -0.3 808,087 - HP15_794 0.26 -1.8 808,087 - HP15_794 0.26 +0.3 808,103 + HP15_794 0.33 -0.0 808,186 + HP15_794 0.69 -2.3 808,279 + -0.4 808,365 + -2.0 808,449 + +0.2 808,664 - HP15_795 0.10 -0.0 808,768 - HP15_795 0.14 -2.6 808,843 - HP15_795 0.17 +0.6 808,942 - HP15_795 0.21 -1.5 809,170 + HP15_795 0.29 +0.4 809,225 + HP15_795 0.32 -1.6 809,282 + HP15_795 0.34 -2.1 809,290 + HP15_795 0.34 -0.6 809,345 + HP15_795 0.36 +0.6 809,348 - HP15_795 0.36 -0.1 809,458 + HP15_795 0.41 -0.5 809,599 - HP15_795 0.46 +0.0 809,726 + HP15_795 0.51 -3.1 809,765 + HP15_795 0.52 +0.3 809,771 + HP15_795 0.53 -0.6 809,803 - HP15_795 0.54 -0.3 809,806 - HP15_795 0.54 +0.4 809,904 - HP15_795 0.58 -0.7 809,919 + HP15_795 0.58 -0.2 809,927 - HP15_795 0.58 -0.1 810,076 + HP15_795 0.64 -4.3 810,150 - HP15_795 0.67 -2.3 810,322 + HP15_795 0.74 -2.6 810,345 + HP15_795 0.75 -0.1 810,421 - HP15_795 0.77 +0.2 810,528 - HP15_795 0.82 -2.0 810,574 - HP15_795 0.83 +0.0 810,585 + HP15_795 0.84 -2.6 810,669 + HP15_795 0.87 +0.2 810,669 + HP15_795 0.87 +0.5 810,669 + HP15_795 0.87 -0.2 810,669 + HP15_795 0.87 +0.2 810,674 + HP15_795 0.87 -0.3 810,677 - HP15_795 0.87 -3.2 810,677 - HP15_795 0.87 -1.6 810,698 + HP15_795 0.88 +0.4 810,706 - HP15_795 0.88 -1.4 810,848 - -0.6 810,858 + +0.3 811,211 + -0.1 811,211 + +0.6 811,219 - -0.2 811,219 - -0.7 811,384 - HP15_796 0.22 -3.2 811,698 + HP15_796 0.45 -0.2 811,715 - HP15_796 0.46 -0.4 811,816 - HP15_796 0.53 -0.6 811,816 - HP15_796 0.53 -3.1 811,843 + HP15_796 0.55 -0.3 811,846 - HP15_796 0.55 -0.7 811,868 + HP15_796 0.57 -0.3 811,920 + HP15_796 0.61 +0.1 811,921 + HP15_796 0.61 -2.5 811,929 - HP15_796 0.61 +0.3 811,957 - HP15_796 0.63 +0.3
Or see this region's nucleotide sequence