Experiment: Control growth in Pro99_seawater
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_768 and HP15_769 are separated by 3 nucleotides HP15_769 and HP15_770 are separated by 158 nucleotides HP15_770 and HP15_771 are separated by 110 nucleotides
HP15_768: HP15_768 - lysyl-tRNA synthetase, at 778,716 to 780,251
_768
HP15_769: HP15_769 - uracil-DNA glycosylase, at 780,255 to 780,989
_769
HP15_770: HP15_770 - signal transduction protein, at 781,148 to 781,981
_770
HP15_771: HP15_771 - glycine cleavage T-protein (aminomethyl transferase), at 782,092 to 783,087
_771
Position (kb) 781
782 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 780.284 kb on + strand at 780.284 kb on + strand at 780.284 kb on + strand at 780.284 kb on + strand at 780.292 kb on - strand at 780.390 kb on + strand, within HP15_769 at 780.398 kb on - strand, within HP15_769 at 780.398 kb on - strand, within HP15_769 at 780.398 kb on - strand, within HP15_769 at 780.413 kb on - strand, within HP15_769 at 780.423 kb on - strand, within HP15_769 at 780.438 kb on + strand, within HP15_769 at 780.438 kb on + strand, within HP15_769 at 780.446 kb on - strand, within HP15_769 at 780.446 kb on - strand, within HP15_769 at 780.482 kb on - strand, within HP15_769 at 780.487 kb on + strand, within HP15_769 at 780.617 kb on + strand, within HP15_769 at 780.622 kb on + strand, within HP15_769 at 780.630 kb on - strand, within HP15_769 at 780.635 kb on - strand, within HP15_769 at 780.682 kb on + strand, within HP15_769 at 780.692 kb on + strand, within HP15_769 at 780.762 kb on - strand, within HP15_769 at 780.819 kb on + strand, within HP15_769 at 780.819 kb on - strand, within HP15_769 at 780.896 kb on + strand, within HP15_769 at 780.915 kb on - strand, within HP15_769 at 780.998 kb on - strand at 781.007 kb on + strand at 781.519 kb on - strand, within HP15_770 at 781.572 kb on + strand, within HP15_770 at 781.622 kb on + strand, within HP15_770 at 781.673 kb on + strand, within HP15_770 at 781.709 kb on + strand, within HP15_770 at 781.709 kb on + strand, within HP15_770 at 781.717 kb on - strand, within HP15_770 at 781.724 kb on - strand, within HP15_770 at 781.878 kb on + strand, within HP15_770 at 781.878 kb on + strand, within HP15_770 at 781.985 kb on + strand at 781.987 kb on + strand at 781.987 kb on + strand at 781.990 kb on - strand at 781.990 kb on - strand at 782.132 kb on + strand at 782.431 kb on + strand, within HP15_771 at 782.567 kb on - strand, within HP15_771 at 782.651 kb on + strand, within HP15_771 at 782.868 kb on - strand, within HP15_771
Per-strain Table
Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater remove 780,284 + +0.1 780,284 + +0.6 780,284 + -3.5 780,284 + +0.1 780,292 - -3.7 780,390 + HP15_769 0.18 +0.4 780,398 - HP15_769 0.19 -2.6 780,398 - HP15_769 0.19 -0.2 780,398 - HP15_769 0.19 +0.4 780,413 - HP15_769 0.21 -0.3 780,423 - HP15_769 0.23 +0.0 780,438 + HP15_769 0.25 +0.3 780,438 + HP15_769 0.25 +0.8 780,446 - HP15_769 0.26 -2.1 780,446 - HP15_769 0.26 -2.5 780,482 - HP15_769 0.31 +0.2 780,487 + HP15_769 0.32 -1.7 780,617 + HP15_769 0.49 -2.8 780,622 + HP15_769 0.50 +1.4 780,630 - HP15_769 0.51 +0.2 780,635 - HP15_769 0.52 -0.4 780,682 + HP15_769 0.58 +0.5 780,692 + HP15_769 0.59 -2.5 780,762 - HP15_769 0.69 +0.3 780,819 + HP15_769 0.77 +0.5 780,819 - HP15_769 0.77 +1.7 780,896 + HP15_769 0.87 -2.8 780,915 - HP15_769 0.90 -1.6 780,998 - +0.4 781,007 + +0.3 781,519 - HP15_770 0.44 +0.2 781,572 + HP15_770 0.51 +1.1 781,622 + HP15_770 0.57 +0.3 781,673 + HP15_770 0.63 +0.7 781,709 + HP15_770 0.67 -2.2 781,709 + HP15_770 0.67 +0.7 781,717 - HP15_770 0.68 -0.0 781,724 - HP15_770 0.69 +1.1 781,878 + HP15_770 0.88 +0.8 781,878 + HP15_770 0.88 +0.8 781,985 + +1.3 781,987 + -3.3 781,987 + +0.6 781,990 - +0.0 781,990 - +0.9 782,132 + +0.2 782,431 + HP15_771 0.34 -0.3 782,567 - HP15_771 0.48 -0.4 782,651 + HP15_771 0.56 -2.4 782,868 - HP15_771 0.78 -0.8
Or see this region's nucleotide sequence