Experiment: Control growth in Pro99_seawater
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_595 and HP15_596 are separated by 203 nucleotides HP15_596 and HP15_597 are separated by 109 nucleotides HP15_597 and HP15_598 overlap by 4 nucleotides
HP15_595: HP15_595 - dihydroxy-acid dehydratase, at 614,592 to 616,385
_595
HP15_596: HP15_596 - signal transduction protein, at 616,589 to 617,845
_596
HP15_597: HP15_597 - peptidase S16, lon domain protein, at 617,955 to 618,476
_597
HP15_598: HP15_598 - phosphoesterase, PA-phosphatase, at 618,473 to 619,930
_598
Position (kb) 616
617
618 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 615.596 kb on + strand, within HP15_595 at 615.626 kb on - strand, within HP15_595 at 615.689 kb on + strand, within HP15_595 at 615.702 kb on - strand, within HP15_595 at 615.791 kb on + strand, within HP15_595 at 615.885 kb on + strand, within HP15_595 at 615.934 kb on + strand, within HP15_595 at 616.090 kb on + strand, within HP15_595 at 616.158 kb on - strand, within HP15_595 at 616.303 kb on - strand at 616.450 kb on + strand at 616.453 kb on - strand at 616.587 kb on - strand at 616.628 kb on - strand at 616.630 kb on + strand at 616.712 kb on - strand at 616.917 kb on + strand, within HP15_596 at 616.925 kb on - strand, within HP15_596 at 616.925 kb on - strand, within HP15_596 at 617.130 kb on + strand, within HP15_596 at 617.231 kb on + strand, within HP15_596 at 617.256 kb on + strand, within HP15_596 at 617.296 kb on + strand, within HP15_596 at 617.360 kb on - strand, within HP15_596 at 617.360 kb on - strand, within HP15_596 at 617.453 kb on + strand, within HP15_596 at 617.461 kb on - strand, within HP15_596 at 617.461 kb on - strand, within HP15_596 at 617.514 kb on + strand, within HP15_596 at 617.548 kb on - strand, within HP15_596 at 617.606 kb on + strand, within HP15_596 at 617.637 kb on + strand, within HP15_596 at 617.735 kb on + strand at 617.737 kb on - strand at 617.762 kb on - strand at 617.805 kb on - strand at 617.887 kb on + strand at 617.895 kb on - strand at 617.895 kb on - strand at 617.939 kb on - strand at 617.947 kb on + strand at 617.998 kb on + strand at 618.006 kb on - strand at 618.040 kb on - strand, within HP15_597 at 618.329 kb on + strand, within HP15_597 at 618.421 kb on + strand, within HP15_597 at 618.628 kb on - strand, within HP15_598 at 618.688 kb on + strand, within HP15_598 at 618.696 kb on - strand, within HP15_598
Per-strain Table
Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater remove 615,596 + HP15_595 0.56 -3.0 615,626 - HP15_595 0.58 -0.5 615,689 + HP15_595 0.61 -0.6 615,702 - HP15_595 0.62 -1.2 615,791 + HP15_595 0.67 -3.2 615,885 + HP15_595 0.72 -0.8 615,934 + HP15_595 0.75 -3.3 616,090 + HP15_595 0.84 -0.2 616,158 - HP15_595 0.87 -0.4 616,303 - -3.2 616,450 + -1.2 616,453 - -0.2 616,587 - +0.4 616,628 - +0.3 616,630 + -2.3 616,712 - +0.3 616,917 + HP15_596 0.26 +1.2 616,925 - HP15_596 0.27 +0.3 616,925 - HP15_596 0.27 +0.6 617,130 + HP15_596 0.43 +1.6 617,231 + HP15_596 0.51 +0.3 617,256 + HP15_596 0.53 +0.4 617,296 + HP15_596 0.56 -1.6 617,360 - HP15_596 0.61 +0.3 617,360 - HP15_596 0.61 +0.6 617,453 + HP15_596 0.69 -1.8 617,461 - HP15_596 0.69 -3.5 617,461 - HP15_596 0.69 -0.6 617,514 + HP15_596 0.74 -2.0 617,548 - HP15_596 0.76 -0.6 617,606 + HP15_596 0.81 +0.2 617,637 + HP15_596 0.83 +1.5 617,735 + -0.0 617,737 - -2.1 617,762 - -3.9 617,805 - -3.8 617,887 + +0.3 617,895 - +0.2 617,895 - +0.5 617,939 - +0.5 617,947 + -0.2 617,998 + +1.2 618,006 - +1.4 618,040 - HP15_597 0.16 +0.6 618,329 + HP15_597 0.72 -0.4 618,421 + HP15_597 0.89 +1.0 618,628 - HP15_598 0.11 +0.4 618,688 + HP15_598 0.15 -2.1 618,696 - HP15_598 0.15 +0.4
Or see this region's nucleotide sequence