Experiment: Control growth in Pro99_seawater
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_463 and HP15_464 are separated by 122 nucleotides HP15_464 and HP15_465 are separated by 55 nucleotides
HP15_463: HP15_463 - fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain protein, at 468,120 to 470,426
_463
HP15_464: HP15_464 - protein containing Patatin domain, at 470,549 to 471,790
_464
HP15_465: HP15_465 - heat shock protein HslVU, ATPase subunit HslU, at 471,846 to 473,174
_465
Position (kb) 470
471
472 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 469.736 kb on - strand, within HP15_463 at 469.900 kb on - strand, within HP15_463 at 469.995 kb on + strand, within HP15_463 at 470.041 kb on + strand, within HP15_463 at 470.060 kb on - strand, within HP15_463 at 470.096 kb on + strand, within HP15_463 at 470.311 kb on + strand at 470.365 kb on + strand at 470.373 kb on - strand at 470.433 kb on + strand at 470.451 kb on - strand at 470.451 kb on - strand at 470.462 kb on + strand at 470.504 kb on - strand at 470.547 kb on - strand at 470.547 kb on - strand at 470.589 kb on + strand at 470.620 kb on - strand at 470.851 kb on - strand, within HP15_464 at 471.007 kb on + strand, within HP15_464 at 471.009 kb on + strand, within HP15_464 at 471.020 kb on - strand, within HP15_464 at 471.238 kb on - strand, within HP15_464 at 471.238 kb on - strand, within HP15_464 at 471.256 kb on + strand, within HP15_464 at 471.390 kb on + strand, within HP15_464 at 471.587 kb on + strand, within HP15_464 at 471.813 kb on - strand at 471.861 kb on + strand at 471.920 kb on + strand at 472.082 kb on + strand, within HP15_465 at 472.184 kb on + strand, within HP15_465 at 472.234 kb on + strand, within HP15_465 at 472.234 kb on + strand, within HP15_465 at 472.234 kb on + strand, within HP15_465
Per-strain Table
Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater remove 469,736 - HP15_463 0.70 -0.9 469,900 - HP15_463 0.77 +0.1 469,995 + HP15_463 0.81 +0.5 470,041 + HP15_463 0.83 +0.4 470,060 - HP15_463 0.84 -3.1 470,096 + HP15_463 0.86 +0.9 470,311 + +1.1 470,365 + -3.0 470,373 - -0.4 470,433 + +0.0 470,451 - +1.0 470,451 - +0.0 470,462 + -0.1 470,504 - +1.1 470,547 - -0.1 470,547 - +0.3 470,589 + +0.0 470,620 - -0.0 470,851 - HP15_464 0.24 -2.6 471,007 + HP15_464 0.37 -2.1 471,009 + HP15_464 0.37 +0.7 471,020 - HP15_464 0.38 +0.7 471,238 - HP15_464 0.55 -0.4 471,238 - HP15_464 0.55 -0.7 471,256 + HP15_464 0.57 -0.1 471,390 + HP15_464 0.68 -2.8 471,587 + HP15_464 0.84 -3.2 471,813 - +0.9 471,861 + +1.6 471,920 + -0.3 472,082 + HP15_465 0.18 -1.7 472,184 + HP15_465 0.25 +0.0 472,234 + HP15_465 0.29 +0.9 472,234 + HP15_465 0.29 -0.9 472,234 + HP15_465 0.29 +1.2
Or see this region's nucleotide sequence