Experiment: Control growth in Pro99_seawater
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g120 and HP15_p187g121 are separated by 97 nucleotides HP15_p187g121 and HP15_p187g122 are separated by 39 nucleotides HP15_p187g122 and HP15_p187g123 are separated by 24 nucleotides
HP15_p187g120: HP15_p187g120 - secreted protein, at 122,018 to 123,472
_p187g120
HP15_p187g121: HP15_p187g121 - protein containing signal transduction response regulator, receiver region domains, at 123,570 to 124,238
_p187g121
HP15_p187g122: HP15_p187g122 - membrane protein, at 124,278 to 124,688
_p187g122
HP15_p187g123: HP15_p187g123 - conserved hypothetical protein, secreted, at 124,713 to 126,365
_p187g123
Position (kb) 123
124
125 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 122.579 kb on + strand, within HP15_p187g120 at 122.579 kb on + strand, within HP15_p187g120 at 122.579 kb on + strand, within HP15_p187g120 at 122.587 kb on - strand, within HP15_p187g120 at 122.587 kb on - strand, within HP15_p187g120 at 122.589 kb on + strand, within HP15_p187g120 at 122.640 kb on + strand, within HP15_p187g120 at 122.640 kb on + strand, within HP15_p187g120 at 122.670 kb on - strand, within HP15_p187g120 at 122.698 kb on - strand, within HP15_p187g120 at 122.785 kb on - strand, within HP15_p187g120 at 122.825 kb on + strand, within HP15_p187g120 at 122.838 kb on - strand, within HP15_p187g120 at 122.852 kb on - strand, within HP15_p187g120 at 122.873 kb on + strand, within HP15_p187g120 at 122.881 kb on - strand, within HP15_p187g120 at 122.881 kb on - strand, within HP15_p187g120 at 122.882 kb on - strand, within HP15_p187g120 at 122.964 kb on + strand, within HP15_p187g120 at 122.964 kb on + strand, within HP15_p187g120 at 123.011 kb on + strand, within HP15_p187g120 at 123.070 kb on + strand, within HP15_p187g120 at 123.078 kb on + strand, within HP15_p187g120 at 123.086 kb on - strand, within HP15_p187g120 at 123.098 kb on + strand, within HP15_p187g120 at 123.101 kb on - strand, within HP15_p187g120 at 123.101 kb on - strand, within HP15_p187g120 at 123.101 kb on - strand, within HP15_p187g120 at 123.111 kb on - strand, within HP15_p187g120 at 123.129 kb on - strand, within HP15_p187g120 at 123.135 kb on + strand, within HP15_p187g120 at 123.144 kb on - strand, within HP15_p187g120 at 123.194 kb on - strand, within HP15_p187g120 at 123.216 kb on - strand, within HP15_p187g120 at 123.262 kb on - strand, within HP15_p187g120 at 123.271 kb on - strand, within HP15_p187g120 at 123.289 kb on - strand, within HP15_p187g120 at 123.293 kb on + strand, within HP15_p187g120 at 123.303 kb on + strand, within HP15_p187g120 at 123.308 kb on - strand, within HP15_p187g120 at 123.309 kb on - strand, within HP15_p187g120 at 123.311 kb on - strand, within HP15_p187g120 at 123.311 kb on - strand, within HP15_p187g120 at 123.316 kb on - strand, within HP15_p187g120 at 123.324 kb on + strand, within HP15_p187g120 at 123.324 kb on + strand, within HP15_p187g120 at 123.330 kb on + strand at 123.338 kb on - strand at 123.364 kb on + strand at 123.364 kb on - strand at 123.387 kb on + strand at 123.387 kb on + strand at 123.387 kb on + strand at 123.395 kb on - strand at 123.467 kb on + strand at 123.475 kb on - strand at 123.475 kb on - strand at 123.536 kb on - strand at 123.577 kb on + strand at 123.579 kb on + strand at 123.587 kb on - strand at 123.587 kb on - strand at 123.638 kb on + strand, within HP15_p187g121 at 123.661 kb on + strand, within HP15_p187g121 at 123.669 kb on - strand, within HP15_p187g121 at 123.669 kb on - strand, within HP15_p187g121 at 123.687 kb on + strand, within HP15_p187g121 at 123.704 kb on - strand, within HP15_p187g121 at 123.772 kb on + strand, within HP15_p187g121 at 123.777 kb on + strand, within HP15_p187g121 at 123.777 kb on + strand, within HP15_p187g121 at 123.786 kb on - strand, within HP15_p187g121 at 123.787 kb on + strand, within HP15_p187g121 at 123.792 kb on + strand, within HP15_p187g121 at 123.795 kb on - strand, within HP15_p187g121 at 123.797 kb on + strand, within HP15_p187g121 at 123.797 kb on + strand, within HP15_p187g121 at 123.805 kb on - strand, within HP15_p187g121 at 123.831 kb on + strand, within HP15_p187g121 at 123.831 kb on + strand, within HP15_p187g121 at 123.831 kb on + strand, within HP15_p187g121 at 123.831 kb on + strand, within HP15_p187g121 at 123.831 kb on + strand, within HP15_p187g121 at 123.831 kb on + strand, within HP15_p187g121 at 123.831 kb on + strand, within HP15_p187g121 at 123.839 kb on + strand, within HP15_p187g121 at 123.839 kb on - strand, within HP15_p187g121 at 123.839 kb on - strand, within HP15_p187g121 at 123.839 kb on - strand, within HP15_p187g121 at 123.839 kb on - strand, within HP15_p187g121 at 123.839 kb on - strand, within HP15_p187g121 at 123.885 kb on - strand, within HP15_p187g121 at 123.887 kb on + strand, within HP15_p187g121 at 123.937 kb on - strand, within HP15_p187g121 at 123.971 kb on + strand, within HP15_p187g121 at 123.971 kb on + strand, within HP15_p187g121 at 123.971 kb on + strand, within HP15_p187g121 at 123.997 kb on + strand, within HP15_p187g121 at 124.057 kb on + strand, within HP15_p187g121 at 124.135 kb on - strand, within HP15_p187g121 at 124.135 kb on - strand, within HP15_p187g121 at 124.135 kb on - strand, within HP15_p187g121 at 124.250 kb on + strand at 124.254 kb on + strand at 124.261 kb on + strand at 124.283 kb on - strand at 124.302 kb on - strand at 124.302 kb on - strand at 124.408 kb on + strand, within HP15_p187g122 at 124.451 kb on + strand, within HP15_p187g122 at 124.454 kb on - strand, within HP15_p187g122 at 124.486 kb on + strand, within HP15_p187g122 at 124.487 kb on + strand, within HP15_p187g122 at 124.491 kb on + strand, within HP15_p187g122 at 124.509 kb on + strand, within HP15_p187g122 at 124.509 kb on - strand, within HP15_p187g122 at 124.543 kb on + strand, within HP15_p187g122 at 124.546 kb on - strand, within HP15_p187g122 at 124.548 kb on + strand, within HP15_p187g122 at 124.548 kb on + strand, within HP15_p187g122 at 124.556 kb on - strand, within HP15_p187g122 at 124.584 kb on + strand, within HP15_p187g122 at 124.765 kb on - strand at 124.808 kb on + strand at 124.880 kb on + strand, within HP15_p187g123 at 124.880 kb on + strand at 124.888 kb on - strand, within HP15_p187g123 at 124.888 kb on - strand, within HP15_p187g123 at 124.888 kb on - strand, within HP15_p187g123 at 124.892 kb on + strand, within HP15_p187g123 at 124.905 kb on - strand, within HP15_p187g123 at 124.915 kb on - strand, within HP15_p187g123 at 124.939 kb on - strand, within HP15_p187g123 at 124.940 kb on + strand, within HP15_p187g123 at 124.945 kb on + strand, within HP15_p187g123 at 124.945 kb on + strand, within HP15_p187g123 at 124.953 kb on - strand, within HP15_p187g123 at 125.026 kb on - strand, within HP15_p187g123 at 125.034 kb on + strand, within HP15_p187g123 at 125.042 kb on - strand, within HP15_p187g123 at 125.054 kb on + strand, within HP15_p187g123 at 125.054 kb on - strand, within HP15_p187g123 at 125.062 kb on - strand, within HP15_p187g123 at 125.062 kb on - strand, within HP15_p187g123 at 125.098 kb on + strand, within HP15_p187g123 at 125.099 kb on + strand, within HP15_p187g123 at 125.099 kb on + strand, within HP15_p187g123 at 125.101 kb on - strand, within HP15_p187g123 at 125.113 kb on + strand, within HP15_p187g123 at 125.131 kb on + strand, within HP15_p187g123 at 125.133 kb on + strand, within HP15_p187g123 at 125.133 kb on + strand, within HP15_p187g123 at 125.134 kb on - strand, within HP15_p187g123 at 125.141 kb on - strand, within HP15_p187g123 at 125.154 kb on + strand, within HP15_p187g123 at 125.185 kb on + strand, within HP15_p187g123 at 125.186 kb on + strand, within HP15_p187g123 at 125.187 kb on + strand, within HP15_p187g123 at 125.193 kb on - strand, within HP15_p187g123 at 125.193 kb on - strand, within HP15_p187g123 at 125.193 kb on - strand, within HP15_p187g123 at 125.226 kb on - strand, within HP15_p187g123
Per-strain Table
Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater remove 122,579 + HP15_p187g120 0.39 -1.6 122,579 + HP15_p187g120 0.39 +1.9 122,579 + HP15_p187g120 0.39 +0.9 122,587 - HP15_p187g120 0.39 +0.4 122,587 - HP15_p187g120 0.39 -0.2 122,589 + HP15_p187g120 0.39 +0.8 122,640 + HP15_p187g120 0.43 -0.2 122,640 + HP15_p187g120 0.43 +1.5 122,670 - HP15_p187g120 0.45 -0.2 122,698 - HP15_p187g120 0.47 +0.2 122,785 - HP15_p187g120 0.53 -0.1 122,825 + HP15_p187g120 0.55 +0.3 122,838 - HP15_p187g120 0.56 -1.9 122,852 - HP15_p187g120 0.57 -2.7 122,873 + HP15_p187g120 0.59 +0.3 122,881 - HP15_p187g120 0.59 -1.4 122,881 - HP15_p187g120 0.59 +1.5 122,882 - HP15_p187g120 0.59 +0.6 122,964 + HP15_p187g120 0.65 +1.5 122,964 + HP15_p187g120 0.65 -0.1 123,011 + HP15_p187g120 0.68 +0.5 123,070 + HP15_p187g120 0.72 +0.6 123,078 + HP15_p187g120 0.73 -1.0 123,086 - HP15_p187g120 0.73 -0.5 123,098 + HP15_p187g120 0.74 -2.6 123,101 - HP15_p187g120 0.74 +0.4 123,101 - HP15_p187g120 0.74 -0.5 123,101 - HP15_p187g120 0.74 -2.5 123,111 - HP15_p187g120 0.75 +0.3 123,129 - HP15_p187g120 0.76 -2.2 123,135 + HP15_p187g120 0.77 +0.3 123,144 - HP15_p187g120 0.77 +0.0 123,194 - HP15_p187g120 0.81 -1.1 123,216 - HP15_p187g120 0.82 -1.9 123,262 - HP15_p187g120 0.85 +0.1 123,271 - HP15_p187g120 0.86 -1.9 123,289 - HP15_p187g120 0.87 +1.2 123,293 + HP15_p187g120 0.88 +0.3 123,303 + HP15_p187g120 0.88 +0.9 123,308 - HP15_p187g120 0.89 -1.0 123,309 - HP15_p187g120 0.89 +2.5 123,311 - HP15_p187g120 0.89 -1.8 123,311 - HP15_p187g120 0.89 +0.2 123,316 - HP15_p187g120 0.89 +0.5 123,324 + HP15_p187g120 0.90 -0.1 123,324 + HP15_p187g120 0.90 +0.7 123,330 + +0.2 123,338 - -3.3 123,364 + -1.4 123,364 - -0.2 123,387 + -1.6 123,387 + +0.5 123,387 + +0.5 123,395 - +0.6 123,467 + +0.3 123,475 - -2.5 123,475 - +0.3 123,536 - +0.7 123,577 + -0.8 123,579 + -1.8 123,587 - +0.3 123,587 - +0.9 123,638 + HP15_p187g121 0.10 +1.1 123,661 + HP15_p187g121 0.14 -1.5 123,669 - HP15_p187g121 0.15 +0.4 123,669 - HP15_p187g121 0.15 -0.9 123,687 + HP15_p187g121 0.17 +1.1 123,704 - HP15_p187g121 0.20 -1.7 123,772 + HP15_p187g121 0.30 +0.7 123,777 + HP15_p187g121 0.31 +0.3 123,777 + HP15_p187g121 0.31 +0.0 123,786 - HP15_p187g121 0.32 -2.0 123,787 + HP15_p187g121 0.32 -0.3 123,792 + HP15_p187g121 0.33 +0.7 123,795 - HP15_p187g121 0.34 +0.9 123,797 + HP15_p187g121 0.34 +0.8 123,797 + HP15_p187g121 0.34 -1.8 123,805 - HP15_p187g121 0.35 +0.5 123,831 + HP15_p187g121 0.39 +0.7 123,831 + HP15_p187g121 0.39 +0.5 123,831 + HP15_p187g121 0.39 -1.5 123,831 + HP15_p187g121 0.39 -0.1 123,831 + HP15_p187g121 0.39 +1.2 123,831 + HP15_p187g121 0.39 +0.6 123,831 + HP15_p187g121 0.39 -0.7 123,839 + HP15_p187g121 0.40 +0.2 123,839 - HP15_p187g121 0.40 -1.0 123,839 - HP15_p187g121 0.40 -0.2 123,839 - HP15_p187g121 0.40 +0.5 123,839 - HP15_p187g121 0.40 +0.6 123,839 - HP15_p187g121 0.40 -0.2 123,885 - HP15_p187g121 0.47 +1.4 123,887 + HP15_p187g121 0.47 +0.6 123,937 - HP15_p187g121 0.55 +0.7 123,971 + HP15_p187g121 0.60 +0.7 123,971 + HP15_p187g121 0.60 +1.4 123,971 + HP15_p187g121 0.60 +1.2 123,997 + HP15_p187g121 0.64 -0.1 124,057 + HP15_p187g121 0.73 +0.8 124,135 - HP15_p187g121 0.84 +0.8 124,135 - HP15_p187g121 0.84 +0.4 124,135 - HP15_p187g121 0.84 -2.1 124,250 + -0.3 124,254 + -0.8 124,261 + +0.8 124,283 - +0.5 124,302 - +0.1 124,302 - +0.3 124,408 + HP15_p187g122 0.32 -2.1 124,451 + HP15_p187g122 0.42 +1.3 124,454 - HP15_p187g122 0.43 -1.3 124,486 + HP15_p187g122 0.51 +0.6 124,487 + HP15_p187g122 0.51 +1.2 124,491 + HP15_p187g122 0.52 -1.6 124,509 + HP15_p187g122 0.56 +0.6 124,509 - HP15_p187g122 0.56 -2.4 124,543 + HP15_p187g122 0.64 -0.5 124,546 - HP15_p187g122 0.65 -0.2 124,548 + HP15_p187g122 0.66 -2.5 124,548 + HP15_p187g122 0.66 +0.5 124,556 - HP15_p187g122 0.68 +0.0 124,584 + HP15_p187g122 0.74 +1.4 124,765 - +0.7 124,808 + -0.7 124,880 + HP15_p187g123 0.10 +1.1 124,880 + +0.3 124,888 - HP15_p187g123 0.11 +0.2 124,888 - HP15_p187g123 0.11 -1.2 124,888 - HP15_p187g123 0.11 +0.3 124,892 + HP15_p187g123 0.11 -0.1 124,905 - HP15_p187g123 0.12 -1.4 124,915 - HP15_p187g123 0.12 +2.0 124,939 - HP15_p187g123 0.14 +0.0 124,940 + HP15_p187g123 0.14 -0.4 124,945 + HP15_p187g123 0.14 +1.0 124,945 + HP15_p187g123 0.14 +2.2 124,953 - HP15_p187g123 0.15 +0.9 125,026 - HP15_p187g123 0.19 -1.6 125,034 + HP15_p187g123 0.19 -0.5 125,042 - HP15_p187g123 0.20 -2.3 125,054 + HP15_p187g123 0.21 +1.3 125,054 - HP15_p187g123 0.21 +0.7 125,062 - HP15_p187g123 0.21 -1.6 125,062 - HP15_p187g123 0.21 +1.4 125,098 + HP15_p187g123 0.23 -3.8 125,099 + HP15_p187g123 0.23 -3.7 125,099 + HP15_p187g123 0.23 -0.0 125,101 - HP15_p187g123 0.23 -1.5 125,113 + HP15_p187g123 0.24 -0.6 125,131 + HP15_p187g123 0.25 +0.7 125,133 + HP15_p187g123 0.25 -0.1 125,133 + HP15_p187g123 0.25 +0.9 125,134 - HP15_p187g123 0.25 +0.2 125,141 - HP15_p187g123 0.26 -0.1 125,154 + HP15_p187g123 0.27 -0.6 125,185 + HP15_p187g123 0.29 +3.2 125,186 + HP15_p187g123 0.29 +0.4 125,187 + HP15_p187g123 0.29 +0.8 125,193 - HP15_p187g123 0.29 -1.8 125,193 - HP15_p187g123 0.29 -0.3 125,193 - HP15_p187g123 0.29 -0.6 125,226 - HP15_p187g123 0.31 +1.2
Or see this region's nucleotide sequence