Experiment: Control growth in Pro99_seawater
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g105 and HP15_p187g106 are separated by 95 nucleotides HP15_p187g106 and HP15_p187g107 are separated by 237 nucleotides HP15_p187g107 and HP15_p187g108 are separated by 44 nucleotides
HP15_p187g105: HP15_p187g105 - integrase, catalytic region, at 99,867 to 100,586
_p187g105
HP15_p187g106: HP15_p187g106 - transposase OrfA, at 100,682 to 101,026
_p187g106
HP15_p187g107: HP15_p187g107 - conserved hypothetical protein, membrane, at 101,264 to 102,328
_p187g107
HP15_p187g108: HP15_p187g108 - conserved hypothetical protein, at 102,373 to 103,455
_p187g108
Position (kb) 101
102
103 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 100.277 kb on + strand, within HP15_p187g105 at 100.281 kb on + strand, within HP15_p187g105 at 100.281 kb on + strand, within HP15_p187g105 at 100.281 kb on + strand, within HP15_p187g105 at 100.283 kb on + strand, within HP15_p187g105 at 100.289 kb on - strand, within HP15_p187g105 at 100.293 kb on + strand, within HP15_p187g105 at 100.293 kb on + strand, within HP15_p187g105 at 100.293 kb on + strand, within HP15_p187g105 at 100.293 kb on + strand, within HP15_p187g105 at 100.301 kb on - strand, within HP15_p187g105 at 100.301 kb on - strand, within HP15_p187g105 at 100.301 kb on - strand, within HP15_p187g105 at 100.322 kb on + strand, within HP15_p187g105 at 100.327 kb on + strand, within HP15_p187g105 at 100.327 kb on + strand, within HP15_p187g105 at 100.327 kb on + strand, within HP15_p187g105 at 100.327 kb on + strand, within HP15_p187g105 at 100.327 kb on + strand, within HP15_p187g105 at 100.327 kb on + strand, within HP15_p187g105 at 100.327 kb on + strand, within HP15_p187g105 at 100.327 kb on + strand, within HP15_p187g105 at 100.327 kb on + strand, within HP15_p187g105 at 100.327 kb on + strand, within HP15_p187g105 at 100.335 kb on - strand, within HP15_p187g105 at 100.335 kb on - strand, within HP15_p187g105 at 100.335 kb on - strand, within HP15_p187g105 at 100.335 kb on - strand, within HP15_p187g105 at 100.335 kb on - strand, within HP15_p187g105 at 100.335 kb on - strand, within HP15_p187g105 at 100.337 kb on + strand, within HP15_p187g105 at 100.345 kb on - strand, within HP15_p187g105 at 100.345 kb on - strand, within HP15_p187g105 at 100.345 kb on - strand, within HP15_p187g105 at 100.351 kb on + strand, within HP15_p187g105 at 100.401 kb on + strand, within HP15_p187g105 at 100.411 kb on - strand, within HP15_p187g105 at 100.428 kb on - strand, within HP15_p187g105 at 100.470 kb on - strand, within HP15_p187g105 at 100.479 kb on - strand, within HP15_p187g105 at 100.485 kb on + strand, within HP15_p187g105 at 100.485 kb on + strand, within HP15_p187g105 at 100.485 kb on + strand, within HP15_p187g105 at 100.493 kb on - strand, within HP15_p187g105 at 100.493 kb on - strand, within HP15_p187g105 at 100.493 kb on - strand, within HP15_p187g105 at 100.493 kb on - strand, within HP15_p187g105 at 100.493 kb on - strand, within HP15_p187g105 at 100.510 kb on + strand, within HP15_p187g105 at 100.512 kb on - strand, within HP15_p187g105 at 100.519 kb on + strand at 100.529 kb on + strand at 100.529 kb on + strand at 100.539 kb on + strand at 100.544 kb on + strand at 100.547 kb on - strand at 100.548 kb on + strand at 100.578 kb on + strand at 100.626 kb on - strand at 100.626 kb on - strand at 100.679 kb on + strand at 100.685 kb on + strand at 100.687 kb on - strand at 100.712 kb on - strand at 100.742 kb on + strand, within HP15_p187g106 at 100.742 kb on + strand, within HP15_p187g106 at 100.750 kb on - strand, within HP15_p187g106 at 100.837 kb on + strand, within HP15_p187g106 at 100.837 kb on + strand, within HP15_p187g106 at 100.837 kb on + strand, within HP15_p187g106 at 100.837 kb on + strand, within HP15_p187g106 at 100.837 kb on + strand, within HP15_p187g106 at 100.837 kb on + strand, within HP15_p187g106 at 100.840 kb on - strand, within HP15_p187g106 at 100.845 kb on - strand, within HP15_p187g106 at 100.845 kb on - strand, within HP15_p187g106 at 100.845 kb on - strand, within HP15_p187g106 at 100.860 kb on + strand, within HP15_p187g106 at 100.876 kb on - strand, within HP15_p187g106 at 100.878 kb on - strand, within HP15_p187g106 at 100.940 kb on + strand, within HP15_p187g106 at 100.948 kb on - strand, within HP15_p187g106 at 100.958 kb on + strand, within HP15_p187g106 at 100.958 kb on + strand, within HP15_p187g106 at 100.958 kb on + strand, within HP15_p187g106 at 100.958 kb on - strand, within HP15_p187g106 at 100.960 kb on + strand, within HP15_p187g106 at 100.960 kb on + strand, within HP15_p187g106 at 100.960 kb on + strand, within HP15_p187g106 at 100.966 kb on - strand, within HP15_p187g106 at 100.966 kb on - strand, within HP15_p187g106 at 100.975 kb on + strand, within HP15_p187g106 at 101.061 kb on + strand at 101.061 kb on + strand at 101.069 kb on - strand at 101.112 kb on + strand at 101.112 kb on + strand at 101.119 kb on - strand at 101.120 kb on - strand at 101.120 kb on - strand at 101.120 kb on - strand at 101.120 kb on - strand at 101.120 kb on - strand at 101.123 kb on + strand at 101.131 kb on - strand at 101.181 kb on + strand at 101.184 kb on - strand at 101.189 kb on - strand at 101.212 kb on + strand at 101.220 kb on - strand at 101.235 kb on + strand at 101.248 kb on + strand at 101.256 kb on - strand at 101.313 kb on + strand at 101.317 kb on - strand at 101.390 kb on - strand, within HP15_p187g107 at 101.413 kb on + strand, within HP15_p187g107 at 101.413 kb on + strand, within HP15_p187g107 at 101.421 kb on - strand, within HP15_p187g107 at 101.421 kb on - strand, within HP15_p187g107 at 101.421 kb on - strand, within HP15_p187g107 at 101.432 kb on + strand, within HP15_p187g107 at 101.459 kb on + strand, within HP15_p187g107 at 101.478 kb on - strand, within HP15_p187g107 at 101.482 kb on + strand, within HP15_p187g107 at 101.610 kb on + strand, within HP15_p187g107 at 101.610 kb on + strand, within HP15_p187g107 at 101.610 kb on + strand, within HP15_p187g107 at 101.618 kb on - strand, within HP15_p187g107 at 101.618 kb on - strand, within HP15_p187g107 at 101.625 kb on + strand, within HP15_p187g107 at 101.633 kb on - strand, within HP15_p187g107 at 101.642 kb on + strand, within HP15_p187g107 at 101.650 kb on - strand, within HP15_p187g107 at 101.682 kb on - strand, within HP15_p187g107 at 101.689 kb on - strand, within HP15_p187g107 at 101.715 kb on + strand, within HP15_p187g107 at 101.715 kb on + strand, within HP15_p187g107 at 101.723 kb on - strand, within HP15_p187g107 at 101.723 kb on - strand, within HP15_p187g107 at 101.745 kb on + strand, within HP15_p187g107 at 101.834 kb on + strand, within HP15_p187g107 at 101.837 kb on - strand, within HP15_p187g107 at 101.842 kb on - strand, within HP15_p187g107 at 101.915 kb on - strand, within HP15_p187g107 at 101.960 kb on - strand, within HP15_p187g107 at 102.012 kb on - strand, within HP15_p187g107 at 102.048 kb on - strand, within HP15_p187g107 at 102.067 kb on + strand, within HP15_p187g107 at 102.070 kb on - strand, within HP15_p187g107 at 102.084 kb on + strand, within HP15_p187g107 at 102.114 kb on + strand, within HP15_p187g107 at 102.203 kb on - strand, within HP15_p187g107 at 102.213 kb on - strand, within HP15_p187g107 at 102.238 kb on + strand at 102.238 kb on + strand at 102.238 kb on + strand at 102.238 kb on + strand at 102.238 kb on + strand at 102.241 kb on - strand at 102.246 kb on - strand at 102.246 kb on - strand at 102.246 kb on - strand at 102.253 kb on - strand at 102.311 kb on + strand at 102.370 kb on - strand at 102.383 kb on + strand at 102.383 kb on + strand at 102.391 kb on - strand at 102.391 kb on - strand at 102.453 kb on - strand at 102.461 kb on + strand at 102.520 kb on - strand, within HP15_p187g108 at 102.520 kb on - strand, within HP15_p187g108 at 102.537 kb on + strand, within HP15_p187g108 at 102.542 kb on + strand, within HP15_p187g108 at 102.542 kb on + strand, within HP15_p187g108 at 102.545 kb on - strand, within HP15_p187g108 at 102.550 kb on - strand, within HP15_p187g108 at 102.550 kb on - strand, within HP15_p187g108 at 102.550 kb on - strand, within HP15_p187g108 at 102.550 kb on - strand, within HP15_p187g108 at 102.551 kb on + strand, within HP15_p187g108 at 102.582 kb on + strand, within HP15_p187g108 at 102.583 kb on - strand, within HP15_p187g108 at 102.587 kb on + strand, within HP15_p187g108 at 102.590 kb on - strand, within HP15_p187g108 at 102.592 kb on + strand, within HP15_p187g108 at 102.597 kb on - strand, within HP15_p187g108 at 102.599 kb on + strand, within HP15_p187g108 at 102.600 kb on - strand, within HP15_p187g108 at 102.602 kb on + strand, within HP15_p187g108 at 102.602 kb on - strand, within HP15_p187g108 at 102.602 kb on - strand, within HP15_p187g108 at 102.641 kb on - strand, within HP15_p187g108 at 102.641 kb on - strand, within HP15_p187g108 at 102.660 kb on + strand, within HP15_p187g108 at 102.704 kb on - strand, within HP15_p187g108 at 102.731 kb on + strand, within HP15_p187g108 at 102.745 kb on - strand, within HP15_p187g108 at 102.822 kb on - strand, within HP15_p187g108 at 102.835 kb on - strand, within HP15_p187g108 at 102.837 kb on - strand, within HP15_p187g108 at 102.837 kb on - strand, within HP15_p187g108 at 102.858 kb on - strand, within HP15_p187g108 at 102.882 kb on - strand, within HP15_p187g108 at 102.889 kb on - strand, within HP15_p187g108 at 102.920 kb on + strand, within HP15_p187g108 at 102.920 kb on + strand, within HP15_p187g108 at 102.920 kb on + strand, within HP15_p187g108 at 102.928 kb on - strand, within HP15_p187g108 at 102.928 kb on - strand, within HP15_p187g108 at 102.938 kb on - strand, within HP15_p187g108 at 102.945 kb on + strand, within HP15_p187g108 at 102.948 kb on - strand, within HP15_p187g108 at 102.960 kb on + strand, within HP15_p187g108 at 102.963 kb on - strand, within HP15_p187g108 at 102.968 kb on - strand, within HP15_p187g108 at 102.968 kb on - strand, within HP15_p187g108 at 102.980 kb on + strand, within HP15_p187g108 at 102.980 kb on + strand, within HP15_p187g108 at 102.985 kb on + strand, within HP15_p187g108 at 102.993 kb on - strand, within HP15_p187g108 at 102.993 kb on - strand, within HP15_p187g108 at 103.015 kb on + strand, within HP15_p187g108 at 103.053 kb on - strand, within HP15_p187g108 at 103.090 kb on + strand, within HP15_p187g108 at 103.169 kb on + strand, within HP15_p187g108 at 103.177 kb on + strand, within HP15_p187g108 at 103.177 kb on + strand, within HP15_p187g108 at 103.177 kb on + strand, within HP15_p187g108 at 103.177 kb on - strand, within HP15_p187g108 at 103.236 kb on + strand, within HP15_p187g108 at 103.237 kb on - strand, within HP15_p187g108 at 103.244 kb on + strand, within HP15_p187g108 at 103.262 kb on - strand, within HP15_p187g108 at 103.279 kb on - strand, within HP15_p187g108 at 103.299 kb on + strand, within HP15_p187g108
Per-strain Table
Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater remove 100,277 + HP15_p187g105 0.57 -3.4 100,281 + HP15_p187g105 0.57 +0.4 100,281 + HP15_p187g105 0.57 -1.8 100,281 + HP15_p187g105 0.57 -0.0 100,283 + HP15_p187g105 0.58 -2.8 100,289 - HP15_p187g105 0.59 +0.3 100,293 + HP15_p187g105 0.59 -1.5 100,293 + HP15_p187g105 0.59 -1.6 100,293 + HP15_p187g105 0.59 +0.7 100,293 + HP15_p187g105 0.59 +0.9 100,301 - HP15_p187g105 0.60 +0.5 100,301 - HP15_p187g105 0.60 -0.1 100,301 - HP15_p187g105 0.60 -0.1 100,322 + HP15_p187g105 0.63 -2.8 100,327 + HP15_p187g105 0.64 +0.7 100,327 + HP15_p187g105 0.64 +0.9 100,327 + HP15_p187g105 0.64 -1.3 100,327 + HP15_p187g105 0.64 +0.7 100,327 + HP15_p187g105 0.64 +0.6 100,327 + HP15_p187g105 0.64 +0.8 100,327 + HP15_p187g105 0.64 -2.2 100,327 + HP15_p187g105 0.64 +0.5 100,327 + HP15_p187g105 0.64 +0.7 100,327 + HP15_p187g105 0.64 +0.6 100,335 - HP15_p187g105 0.65 -0.0 100,335 - HP15_p187g105 0.65 +0.8 100,335 - HP15_p187g105 0.65 +2.0 100,335 - HP15_p187g105 0.65 -0.3 100,335 - HP15_p187g105 0.65 +1.2 100,335 - HP15_p187g105 0.65 +1.0 100,337 + HP15_p187g105 0.65 +0.3 100,345 - HP15_p187g105 0.66 +0.5 100,345 - HP15_p187g105 0.66 +0.5 100,345 - HP15_p187g105 0.66 +0.3 100,351 + HP15_p187g105 0.67 +0.2 100,401 + HP15_p187g105 0.74 +0.3 100,411 - HP15_p187g105 0.76 -0.5 100,428 - HP15_p187g105 0.78 -3.5 100,470 - HP15_p187g105 0.84 -0.3 100,479 - HP15_p187g105 0.85 -4.1 100,485 + HP15_p187g105 0.86 +0.1 100,485 + HP15_p187g105 0.86 +1.0 100,485 + HP15_p187g105 0.86 +0.3 100,493 - HP15_p187g105 0.87 +0.6 100,493 - HP15_p187g105 0.87 -1.0 100,493 - HP15_p187g105 0.87 -1.9 100,493 - HP15_p187g105 0.87 +0.8 100,493 - HP15_p187g105 0.87 -2.1 100,510 + HP15_p187g105 0.89 +1.8 100,512 - HP15_p187g105 0.90 -4.0 100,519 + +0.5 100,529 + +0.8 100,529 + +1.6 100,539 + +1.5 100,544 + -0.3 100,547 - -0.2 100,548 + +0.7 100,578 + -1.0 100,626 - +0.6 100,626 - +0.5 100,679 + +0.8 100,685 + +0.1 100,687 - -0.1 100,712 - +0.7 100,742 + HP15_p187g106 0.17 +0.4 100,742 + HP15_p187g106 0.17 +0.7 100,750 - HP15_p187g106 0.20 +0.7 100,837 + HP15_p187g106 0.45 -0.1 100,837 + HP15_p187g106 0.45 -0.6 100,837 + HP15_p187g106 0.45 +0.3 100,837 + HP15_p187g106 0.45 -2.3 100,837 + HP15_p187g106 0.45 -2.1 100,837 + HP15_p187g106 0.45 +0.4 100,840 - HP15_p187g106 0.46 +0.2 100,845 - HP15_p187g106 0.47 -2.4 100,845 - HP15_p187g106 0.47 +0.6 100,845 - HP15_p187g106 0.47 +0.1 100,860 + HP15_p187g106 0.52 +0.9 100,876 - HP15_p187g106 0.56 -2.6 100,878 - HP15_p187g106 0.57 +2.8 100,940 + HP15_p187g106 0.75 +0.3 100,948 - HP15_p187g106 0.77 +0.9 100,958 + HP15_p187g106 0.80 -1.8 100,958 + HP15_p187g106 0.80 +1.2 100,958 + HP15_p187g106 0.80 -0.7 100,958 - HP15_p187g106 0.80 +0.5 100,960 + HP15_p187g106 0.81 -1.0 100,960 + HP15_p187g106 0.81 +0.3 100,960 + HP15_p187g106 0.81 -0.1 100,966 - HP15_p187g106 0.82 +0.7 100,966 - HP15_p187g106 0.82 +0.6 100,975 + HP15_p187g106 0.85 +0.8 101,061 + -1.4 101,061 + +0.6 101,069 - -0.3 101,112 + +0.5 101,112 + +0.6 101,119 - -3.4 101,120 - -1.3 101,120 - -1.9 101,120 - -1.7 101,120 - +0.6 101,120 - +1.9 101,123 + +0.7 101,131 - -0.0 101,181 + -4.0 101,184 - +0.4 101,189 - +0.7 101,212 + +0.6 101,220 - -3.6 101,235 + +0.4 101,248 + +1.0 101,256 - +0.2 101,313 + -0.4 101,317 - +0.3 101,390 - HP15_p187g107 0.12 -3.5 101,413 + HP15_p187g107 0.14 -0.8 101,413 + HP15_p187g107 0.14 +0.0 101,421 - HP15_p187g107 0.15 -0.4 101,421 - HP15_p187g107 0.15 -0.2 101,421 - HP15_p187g107 0.15 -1.4 101,432 + HP15_p187g107 0.16 -1.0 101,459 + HP15_p187g107 0.18 -2.1 101,478 - HP15_p187g107 0.20 +0.5 101,482 + HP15_p187g107 0.20 +0.9 101,610 + HP15_p187g107 0.32 -1.8 101,610 + HP15_p187g107 0.32 +0.7 101,610 + HP15_p187g107 0.32 +0.4 101,618 - HP15_p187g107 0.33 -1.7 101,618 - HP15_p187g107 0.33 +1.2 101,625 + HP15_p187g107 0.34 -0.3 101,633 - HP15_p187g107 0.35 +0.5 101,642 + HP15_p187g107 0.35 -0.7 101,650 - HP15_p187g107 0.36 +1.0 101,682 - HP15_p187g107 0.39 -2.3 101,689 - HP15_p187g107 0.40 -1.1 101,715 + HP15_p187g107 0.42 -0.3 101,715 + HP15_p187g107 0.42 +0.5 101,723 - HP15_p187g107 0.43 -1.3 101,723 - HP15_p187g107 0.43 -3.6 101,745 + HP15_p187g107 0.45 -1.5 101,834 + HP15_p187g107 0.54 -0.4 101,837 - HP15_p187g107 0.54 +0.4 101,842 - HP15_p187g107 0.54 -1.7 101,915 - HP15_p187g107 0.61 +0.4 101,960 - HP15_p187g107 0.65 +0.3 102,012 - HP15_p187g107 0.70 -0.5 102,048 - HP15_p187g107 0.74 -1.7 102,067 + HP15_p187g107 0.75 +0.2 102,070 - HP15_p187g107 0.76 +0.1 102,084 + HP15_p187g107 0.77 +0.3 102,114 + HP15_p187g107 0.80 +0.2 102,203 - HP15_p187g107 0.88 -2.2 102,213 - HP15_p187g107 0.89 +0.7 102,238 + -0.4 102,238 + +0.5 102,238 + +0.6 102,238 + -1.8 102,238 + +0.4 102,241 - -2.5 102,246 - +0.9 102,246 - +0.5 102,246 - +0.5 102,253 - -2.4 102,311 + +0.4 102,370 - +0.5 102,383 + +0.8 102,383 + +0.2 102,391 - -0.3 102,391 - -0.9 102,453 - +1.6 102,461 + -1.1 102,520 - HP15_p187g108 0.14 -2.3 102,520 - HP15_p187g108 0.14 +0.2 102,537 + HP15_p187g108 0.15 -0.2 102,542 + HP15_p187g108 0.16 -2.0 102,542 + HP15_p187g108 0.16 +0.4 102,545 - HP15_p187g108 0.16 +0.9 102,550 - HP15_p187g108 0.16 -0.3 102,550 - HP15_p187g108 0.16 +0.8 102,550 - HP15_p187g108 0.16 -2.3 102,550 - HP15_p187g108 0.16 +0.6 102,551 + HP15_p187g108 0.16 +1.4 102,582 + HP15_p187g108 0.19 -1.9 102,583 - HP15_p187g108 0.19 -0.4 102,587 + HP15_p187g108 0.20 +0.7 102,590 - HP15_p187g108 0.20 +1.0 102,592 + HP15_p187g108 0.20 -0.6 102,597 - HP15_p187g108 0.21 +0.2 102,599 + HP15_p187g108 0.21 +0.6 102,600 - HP15_p187g108 0.21 +0.4 102,602 + HP15_p187g108 0.21 +0.6 102,602 - HP15_p187g108 0.21 -1.8 102,602 - HP15_p187g108 0.21 -2.0 102,641 - HP15_p187g108 0.25 -1.5 102,641 - HP15_p187g108 0.25 +0.3 102,660 + HP15_p187g108 0.27 +0.2 102,704 - HP15_p187g108 0.31 -2.1 102,731 + HP15_p187g108 0.33 -2.3 102,745 - HP15_p187g108 0.34 +0.7 102,822 - HP15_p187g108 0.41 +0.2 102,835 - HP15_p187g108 0.43 +0.5 102,837 - HP15_p187g108 0.43 +0.7 102,837 - HP15_p187g108 0.43 +0.6 102,858 - HP15_p187g108 0.45 -1.5 102,882 - HP15_p187g108 0.47 -1.1 102,889 - HP15_p187g108 0.48 +0.4 102,920 + HP15_p187g108 0.51 +0.5 102,920 + HP15_p187g108 0.51 +0.4 102,920 + HP15_p187g108 0.51 +0.4 102,928 - HP15_p187g108 0.51 +1.4 102,928 - HP15_p187g108 0.51 -1.7 102,938 - HP15_p187g108 0.52 +0.3 102,945 + HP15_p187g108 0.53 -2.6 102,948 - HP15_p187g108 0.53 -0.9 102,960 + HP15_p187g108 0.54 +0.2 102,963 - HP15_p187g108 0.54 -0.7 102,968 - HP15_p187g108 0.55 -1.2 102,968 - HP15_p187g108 0.55 -0.7 102,980 + HP15_p187g108 0.56 -0.3 102,980 + HP15_p187g108 0.56 -2.6 102,985 + HP15_p187g108 0.57 -3.1 102,993 - HP15_p187g108 0.57 +2.4 102,993 - HP15_p187g108 0.57 -2.5 103,015 + HP15_p187g108 0.59 +0.9 103,053 - HP15_p187g108 0.63 -0.3 103,090 + HP15_p187g108 0.66 -2.7 103,169 + HP15_p187g108 0.73 -1.7 103,177 + HP15_p187g108 0.74 +0.8 103,177 + HP15_p187g108 0.74 +0.4 103,177 + HP15_p187g108 0.74 +0.4 103,177 - HP15_p187g108 0.74 +1.0 103,236 + HP15_p187g108 0.80 +0.5 103,237 - HP15_p187g108 0.80 +0.5 103,244 + HP15_p187g108 0.80 -0.1 103,262 - HP15_p187g108 0.82 -0.0 103,279 - HP15_p187g108 0.84 +0.3 103,299 + HP15_p187g108 0.86 +0.8
Or see this region's nucleotide sequence