Experiment: Control growth in Pro99_seawater
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g6 and HP15_p187g7 are separated by 55 nucleotides HP15_p187g7 and HP15_p187g8 are separated by 9 nucleotides
HP15_p187g6: HP15_p187g6 - pilus assembly, Flp-type CpaB, at 3,115 to 4,032
_p187g6
HP15_p187g7: HP15_p187g7 - type II and III secretion system protein, at 4,088 to 5,209
_p187g7
HP15_p187g8: HP15_p187g8 - response regulator receiver-like protein, at 5,219 to 6,406
_p187g8
Position (kb) 4
5
6 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 3.139 kb on + strand at 3.148 kb on - strand at 3.181 kb on + strand at 3.189 kb on - strand at 3.212 kb on - strand, within HP15_p187g6 at 3.212 kb on - strand, within HP15_p187g6 at 3.291 kb on - strand, within HP15_p187g6 at 3.319 kb on - strand, within HP15_p187g6 at 3.336 kb on - strand, within HP15_p187g6 at 3.336 kb on - strand, within HP15_p187g6 at 3.345 kb on + strand, within HP15_p187g6 at 3.528 kb on + strand, within HP15_p187g6 at 3.549 kb on - strand, within HP15_p187g6 at 3.550 kb on + strand, within HP15_p187g6 at 3.558 kb on - strand, within HP15_p187g6 at 3.568 kb on - strand, within HP15_p187g6 at 3.631 kb on - strand, within HP15_p187g6 at 3.712 kb on + strand, within HP15_p187g6 at 3.748 kb on - strand, within HP15_p187g6 at 3.864 kb on + strand, within HP15_p187g6 at 3.864 kb on + strand, within HP15_p187g6 at 3.869 kb on + strand, within HP15_p187g6 at 3.870 kb on + strand, within HP15_p187g6 at 3.872 kb on - strand, within HP15_p187g6 at 3.872 kb on - strand, within HP15_p187g6 at 3.872 kb on - strand, within HP15_p187g6 at 3.872 kb on - strand, within HP15_p187g6 at 3.900 kb on + strand, within HP15_p187g6 at 3.908 kb on - strand, within HP15_p187g6 at 3.929 kb on + strand, within HP15_p187g6 at 3.929 kb on + strand, within HP15_p187g6 at 3.929 kb on + strand, within HP15_p187g6 at 3.932 kb on - strand, within HP15_p187g6 at 3.942 kb on + strand at 3.950 kb on - strand at 3.970 kb on + strand at 4.025 kb on - strand at 4.025 kb on - strand at 4.106 kb on + strand at 4.106 kb on + strand at 4.114 kb on - strand at 4.114 kb on - strand at 4.114 kb on - strand at 4.114 kb on - strand at 4.162 kb on + strand at 4.186 kb on + strand at 4.208 kb on - strand, within HP15_p187g7 at 4.213 kb on + strand, within HP15_p187g7 at 4.269 kb on + strand, within HP15_p187g7 at 4.277 kb on - strand, within HP15_p187g7 at 4.336 kb on + strand, within HP15_p187g7 at 4.336 kb on + strand, within HP15_p187g7 at 4.370 kb on - strand, within HP15_p187g7 at 4.370 kb on - strand, within HP15_p187g7 at 4.381 kb on + strand, within HP15_p187g7 at 4.409 kb on + strand, within HP15_p187g7 at 4.417 kb on - strand, within HP15_p187g7 at 4.434 kb on + strand, within HP15_p187g7 at 4.437 kb on - strand, within HP15_p187g7 at 4.442 kb on - strand, within HP15_p187g7 at 4.444 kb on + strand, within HP15_p187g7 at 4.482 kb on - strand, within HP15_p187g7 at 4.509 kb on + strand, within HP15_p187g7 at 4.538 kb on + strand, within HP15_p187g7 at 4.545 kb on + strand, within HP15_p187g7 at 4.546 kb on - strand, within HP15_p187g7 at 4.560 kb on + strand, within HP15_p187g7 at 4.568 kb on - strand, within HP15_p187g7 at 4.607 kb on - strand, within HP15_p187g7 at 4.634 kb on + strand, within HP15_p187g7 at 4.771 kb on + strand, within HP15_p187g7 at 4.803 kb on + strand, within HP15_p187g7 at 4.803 kb on + strand, within HP15_p187g7 at 4.811 kb on - strand, within HP15_p187g7 at 4.811 kb on - strand, within HP15_p187g7 at 4.847 kb on + strand, within HP15_p187g7 at 4.859 kb on - strand, within HP15_p187g7 at 4.917 kb on + strand, within HP15_p187g7 at 4.971 kb on + strand, within HP15_p187g7 at 4.984 kb on - strand, within HP15_p187g7 at 5.042 kb on + strand, within HP15_p187g7 at 5.131 kb on + strand at 5.131 kb on + strand at 5.131 kb on + strand at 5.131 kb on + strand at 5.131 kb on + strand at 5.131 kb on + strand at 5.131 kb on + strand at 5.131 kb on + strand at 5.131 kb on + strand at 5.131 kb on + strand at 5.139 kb on - strand at 5.139 kb on - strand at 5.139 kb on - strand at 5.139 kb on - strand at 5.139 kb on - strand at 5.139 kb on - strand at 5.139 kb on - strand at 5.139 kb on - strand at 5.195 kb on + strand at 5.203 kb on - strand at 5.271 kb on - strand at 5.274 kb on + strand at 5.287 kb on - strand at 5.308 kb on + strand at 5.316 kb on + strand at 5.316 kb on + strand at 5.326 kb on + strand at 5.397 kb on - strand, within HP15_p187g8 at 5.439 kb on + strand, within HP15_p187g8 at 5.447 kb on - strand, within HP15_p187g8 at 5.464 kb on - strand, within HP15_p187g8 at 5.541 kb on + strand, within HP15_p187g8 at 5.581 kb on - strand, within HP15_p187g8 at 5.590 kb on + strand, within HP15_p187g8 at 5.595 kb on + strand, within HP15_p187g8 at 5.598 kb on - strand, within HP15_p187g8 at 5.602 kb on + strand, within HP15_p187g8 at 5.602 kb on + strand, within HP15_p187g8 at 5.602 kb on + strand, within HP15_p187g8 at 5.602 kb on + strand, within HP15_p187g8 at 5.602 kb on + strand, within HP15_p187g8 at 5.602 kb on + strand, within HP15_p187g8 at 5.610 kb on - strand, within HP15_p187g8 at 5.610 kb on - strand, within HP15_p187g8 at 5.613 kb on - strand, within HP15_p187g8 at 5.624 kb on - strand, within HP15_p187g8 at 5.624 kb on - strand, within HP15_p187g8 at 5.650 kb on - strand, within HP15_p187g8 at 5.721 kb on + strand, within HP15_p187g8 at 5.861 kb on - strand, within HP15_p187g8 at 6.075 kb on + strand, within HP15_p187g8 at 6.122 kb on + strand, within HP15_p187g8
Per-strain Table
Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater remove 3,139 + -3.3 3,148 - -1.6 3,181 + -0.9 3,189 - -0.4 3,212 - HP15_p187g6 0.11 -0.9 3,212 - HP15_p187g6 0.11 -2.3 3,291 - HP15_p187g6 0.19 -1.2 3,319 - HP15_p187g6 0.22 -1.5 3,336 - HP15_p187g6 0.24 -1.4 3,336 - HP15_p187g6 0.24 -0.9 3,345 + HP15_p187g6 0.25 -1.6 3,528 + HP15_p187g6 0.45 -2.8 3,549 - HP15_p187g6 0.47 -1.1 3,550 + HP15_p187g6 0.47 -2.3 3,558 - HP15_p187g6 0.48 -0.0 3,568 - HP15_p187g6 0.49 -2.1 3,631 - HP15_p187g6 0.56 -1.8 3,712 + HP15_p187g6 0.65 -2.3 3,748 - HP15_p187g6 0.69 -1.5 3,864 + HP15_p187g6 0.82 -1.1 3,864 + HP15_p187g6 0.82 -1.4 3,869 + HP15_p187g6 0.82 -3.0 3,870 + HP15_p187g6 0.82 -2.3 3,872 - HP15_p187g6 0.82 -0.7 3,872 - HP15_p187g6 0.82 -1.8 3,872 - HP15_p187g6 0.82 -2.0 3,872 - HP15_p187g6 0.82 -2.1 3,900 + HP15_p187g6 0.86 -0.9 3,908 - HP15_p187g6 0.86 -2.2 3,929 + HP15_p187g6 0.89 -0.9 3,929 + HP15_p187g6 0.89 +1.6 3,929 + HP15_p187g6 0.89 -1.0 3,932 - HP15_p187g6 0.89 -1.9 3,942 + -3.5 3,950 - -3.6 3,970 + -0.7 4,025 - -1.7 4,025 - -1.7 4,106 + -0.5 4,106 + -1.6 4,114 - -3.0 4,114 - +0.1 4,114 - -1.0 4,114 - -2.8 4,162 + -1.3 4,186 + -3.0 4,208 - HP15_p187g7 0.11 -1.1 4,213 + HP15_p187g7 0.11 -1.7 4,269 + HP15_p187g7 0.16 -0.9 4,277 - HP15_p187g7 0.17 -1.6 4,336 + HP15_p187g7 0.22 -1.4 4,336 + HP15_p187g7 0.22 -1.7 4,370 - HP15_p187g7 0.25 -3.1 4,370 - HP15_p187g7 0.25 -1.2 4,381 + HP15_p187g7 0.26 -2.4 4,409 + HP15_p187g7 0.29 -1.2 4,417 - HP15_p187g7 0.29 -1.8 4,434 + HP15_p187g7 0.31 +0.4 4,437 - HP15_p187g7 0.31 -3.7 4,442 - HP15_p187g7 0.32 -1.7 4,444 + HP15_p187g7 0.32 -2.9 4,482 - HP15_p187g7 0.35 -1.5 4,509 + HP15_p187g7 0.38 -1.3 4,538 + HP15_p187g7 0.40 -1.4 4,545 + HP15_p187g7 0.41 -1.2 4,546 - HP15_p187g7 0.41 -1.1 4,560 + HP15_p187g7 0.42 -0.9 4,568 - HP15_p187g7 0.43 -2.3 4,607 - HP15_p187g7 0.46 -2.7 4,634 + HP15_p187g7 0.49 -1.8 4,771 + HP15_p187g7 0.61 +0.0 4,803 + HP15_p187g7 0.64 -1.1 4,803 + HP15_p187g7 0.64 -4.6 4,811 - HP15_p187g7 0.64 -1.6 4,811 - HP15_p187g7 0.64 -1.5 4,847 + HP15_p187g7 0.68 -4.1 4,859 - HP15_p187g7 0.69 -1.6 4,917 + HP15_p187g7 0.74 -3.1 4,971 + HP15_p187g7 0.79 -1.9 4,984 - HP15_p187g7 0.80 -3.2 5,042 + HP15_p187g7 0.85 -3.6 5,131 + -2.1 5,131 + -2.4 5,131 + -1.1 5,131 + -1.2 5,131 + -2.2 5,131 + -1.3 5,131 + -1.4 5,131 + -1.6 5,131 + -0.1 5,131 + +1.3 5,139 - -2.2 5,139 - -2.2 5,139 - -1.2 5,139 - -1.8 5,139 - -1.7 5,139 - -2.3 5,139 - +0.0 5,139 - -3.0 5,195 + -2.1 5,203 - -2.6 5,271 - -0.4 5,274 + -1.7 5,287 - -1.1 5,308 + -1.9 5,316 + -1.9 5,316 + -0.2 5,326 + -1.8 5,397 - HP15_p187g8 0.15 -2.8 5,439 + HP15_p187g8 0.19 -1.0 5,447 - HP15_p187g8 0.19 +0.4 5,464 - HP15_p187g8 0.21 -1.7 5,541 + HP15_p187g8 0.27 -1.0 5,581 - HP15_p187g8 0.30 -3.3 5,590 + HP15_p187g8 0.31 -0.4 5,595 + HP15_p187g8 0.32 -1.2 5,598 - HP15_p187g8 0.32 -2.7 5,602 + HP15_p187g8 0.32 -0.8 5,602 + HP15_p187g8 0.32 -0.6 5,602 + HP15_p187g8 0.32 -0.9 5,602 + HP15_p187g8 0.32 -3.2 5,602 + HP15_p187g8 0.32 -2.0 5,602 + HP15_p187g8 0.32 -1.7 5,610 - HP15_p187g8 0.33 -4.2 5,610 - HP15_p187g8 0.33 -1.4 5,613 - HP15_p187g8 0.33 -1.0 5,624 - HP15_p187g8 0.34 -1.5 5,624 - HP15_p187g8 0.34 -2.2 5,650 - HP15_p187g8 0.36 -1.2 5,721 + HP15_p187g8 0.42 -0.9 5,861 - HP15_p187g8 0.54 -3.4 6,075 + HP15_p187g8 0.72 -2.9 6,122 + HP15_p187g8 0.76 -1.4
Or see this region's nucleotide sequence