Experiment: Control growth in Pro99_seawater
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_4153 and HP15_4154 are separated by 78 nucleotides HP15_4154 and HP15_4155 overlap by 23 nucleotides HP15_4155 and HP15_4156 are separated by 92 nucleotides
HP15_4153: HP15_4153 - hypothetical protein, at 4,390,046 to 4,390,633
_4153
HP15_4154: HP15_4154 - glycosyl transferase family protein, at 4,390,712 to 4,391,338
_4154
HP15_4155: HP15_4155 - hypothetical protein, at 4,391,316 to 4,391,984
_4155
HP15_4156: HP15_4156 - conserved hypothetical protein, at 4,392,077 to 4,392,934
_4156
Position (kb)
4391
4392 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 4390.344 kb on + strand, within HP15_4153 at 4390.344 kb on + strand, within HP15_4153 at 4390.359 kb on + strand, within HP15_4153 at 4390.359 kb on + strand, within HP15_4153 at 4390.367 kb on - strand, within HP15_4153 at 4390.397 kb on - strand, within HP15_4153 at 4390.401 kb on + strand, within HP15_4153 at 4390.409 kb on - strand, within HP15_4153 at 4390.409 kb on - strand, within HP15_4153 at 4390.421 kb on + strand, within HP15_4153 at 4390.425 kb on - strand, within HP15_4153 at 4390.437 kb on - strand, within HP15_4153 at 4390.456 kb on + strand, within HP15_4153 at 4390.464 kb on - strand, within HP15_4153 at 4390.555 kb on - strand, within HP15_4153 at 4390.634 kb on - strand at 4390.634 kb on - strand at 4390.634 kb on - strand at 4390.639 kb on + strand at 4390.641 kb on - strand at 4390.772 kb on - strand at 4390.859 kb on + strand, within HP15_4154 at 4390.867 kb on + strand, within HP15_4154 at 4390.891 kb on + strand, within HP15_4154 at 4390.891 kb on + strand, within HP15_4154 at 4390.891 kb on + strand, within HP15_4154 at 4390.899 kb on - strand, within HP15_4154 at 4390.899 kb on - strand, within HP15_4154 at 4390.899 kb on - strand, within HP15_4154 at 4390.899 kb on - strand, within HP15_4154 at 4390.899 kb on - strand, within HP15_4154 at 4390.899 kb on - strand, within HP15_4154 at 4390.899 kb on - strand, within HP15_4154 at 4390.899 kb on - strand, within HP15_4154 at 4390.899 kb on - strand, within HP15_4154 at 4390.899 kb on - strand, within HP15_4154 at 4390.936 kb on - strand, within HP15_4154 at 4390.955 kb on + strand, within HP15_4154 at 4390.957 kb on + strand, within HP15_4154 at 4390.957 kb on - strand, within HP15_4154 at 4390.976 kb on - strand, within HP15_4154 at 4390.980 kb on + strand, within HP15_4154 at 4391.035 kb on + strand, within HP15_4154 at 4391.053 kb on + strand, within HP15_4154 at 4391.061 kb on - strand, within HP15_4154 at 4391.219 kb on - strand, within HP15_4154 at 4391.288 kb on - strand at 4391.288 kb on - strand at 4391.305 kb on - strand at 4391.314 kb on + strand at 4391.323 kb on - strand at 4391.411 kb on + strand, within HP15_4155 at 4391.679 kb on - strand, within HP15_4155 at 4391.696 kb on - strand, within HP15_4155 at 4391.755 kb on - strand, within HP15_4155 at 4391.847 kb on - strand, within HP15_4155 at 4391.851 kb on + strand, within HP15_4155 at 4391.859 kb on - strand, within HP15_4155 at 4391.923 kb on + strand at 4392.047 kb on - strand at 4392.172 kb on - strand, within HP15_4156 at 4392.316 kb on - strand, within HP15_4156 at 4392.316 kb on - strand, within HP15_4156 at 4392.316 kb on - strand, within HP15_4156 at 4392.368 kb on + strand, within HP15_4156 at 4392.376 kb on - strand, within HP15_4156 at 4392.376 kb on - strand, within HP15_4156 at 4392.376 kb on - strand, within HP15_4156 at 4392.376 kb on - strand, within HP15_4156 at 4392.391 kb on - strand, within HP15_4156 at 4392.445 kb on + strand, within HP15_4156 at 4392.452 kb on + strand, within HP15_4156 at 4392.453 kb on + strand, within HP15_4156 at 4392.475 kb on + strand, within HP15_4156 at 4392.480 kb on - strand, within HP15_4156 at 4392.518 kb on + strand, within HP15_4156 at 4392.548 kb on + strand, within HP15_4156 at 4392.595 kb on + strand, within HP15_4156 at 4392.601 kb on - strand, within HP15_4156 at 4392.659 kb on - strand, within HP15_4156 at 4392.684 kb on - strand, within HP15_4156 at 4392.745 kb on + strand, within HP15_4156 at 4392.745 kb on + strand, within HP15_4156 at 4392.817 kb on - strand, within HP15_4156 at 4392.827 kb on + strand, within HP15_4156 at 4392.893 kb on + strand at 4392.916 kb on + strand at 4392.916 kb on + strand at 4392.921 kb on + strand at 4392.924 kb on - strand at 4392.924 kb on - strand at 4392.926 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater remove 4,390,344 + HP15_4153 0.51 +0.9 4,390,344 + HP15_4153 0.51 -0.5 4,390,359 + HP15_4153 0.53 -2.3 4,390,359 + HP15_4153 0.53 -2.4 4,390,367 - HP15_4153 0.55 +0.0 4,390,397 - HP15_4153 0.60 -3.3 4,390,401 + HP15_4153 0.60 +0.3 4,390,409 - HP15_4153 0.62 -0.8 4,390,409 - HP15_4153 0.62 -1.0 4,390,421 + HP15_4153 0.64 +0.2 4,390,425 - HP15_4153 0.64 -2.9 4,390,437 - HP15_4153 0.66 -1.1 4,390,456 + HP15_4153 0.70 -0.0 4,390,464 - HP15_4153 0.71 -1.7 4,390,555 - HP15_4153 0.87 -0.8 4,390,634 - -1.5 4,390,634 - +0.3 4,390,634 - -0.9 4,390,639 + -0.3 4,390,641 - +0.7 4,390,772 - +0.1 4,390,859 + HP15_4154 0.23 +0.0 4,390,867 + HP15_4154 0.25 -0.4 4,390,891 + HP15_4154 0.29 -2.3 4,390,891 + HP15_4154 0.29 +0.3 4,390,891 + HP15_4154 0.29 -0.2 4,390,899 - HP15_4154 0.30 -2.0 4,390,899 - HP15_4154 0.30 +1.2 4,390,899 - HP15_4154 0.30 +0.3 4,390,899 - HP15_4154 0.30 -1.7 4,390,899 - HP15_4154 0.30 -2.7 4,390,899 - HP15_4154 0.30 -1.0 4,390,899 - HP15_4154 0.30 -0.4 4,390,899 - HP15_4154 0.30 +1.1 4,390,899 - HP15_4154 0.30 +0.4 4,390,899 - HP15_4154 0.30 -0.9 4,390,936 - HP15_4154 0.36 -0.6 4,390,955 + HP15_4154 0.39 +0.2 4,390,957 + HP15_4154 0.39 +0.6 4,390,957 - HP15_4154 0.39 +0.1 4,390,976 - HP15_4154 0.42 -0.8 4,390,980 + HP15_4154 0.43 -3.8 4,391,035 + HP15_4154 0.52 +0.3 4,391,053 + HP15_4154 0.54 +0.7 4,391,061 - HP15_4154 0.56 +0.6 4,391,219 - HP15_4154 0.81 +0.4 4,391,288 - +0.0 4,391,288 - +1.2 4,391,305 - +0.4 4,391,314 + +0.7 4,391,323 - +0.1 4,391,411 + HP15_4155 0.14 -2.2 4,391,679 - HP15_4155 0.54 -0.2 4,391,696 - HP15_4155 0.57 -1.7 4,391,755 - HP15_4155 0.66 +0.3 4,391,847 - HP15_4155 0.79 -2.8 4,391,851 + HP15_4155 0.80 -0.6 4,391,859 - HP15_4155 0.81 +0.1 4,391,923 + +0.6 4,392,047 - -3.4 4,392,172 - HP15_4156 0.11 +0.3 4,392,316 - HP15_4156 0.28 +0.6 4,392,316 - HP15_4156 0.28 -3.3 4,392,316 - HP15_4156 0.28 +0.2 4,392,368 + HP15_4156 0.34 -1.8 4,392,376 - HP15_4156 0.35 -0.2 4,392,376 - HP15_4156 0.35 +0.2 4,392,376 - HP15_4156 0.35 -3.7 4,392,376 - HP15_4156 0.35 +0.9 4,392,391 - HP15_4156 0.37 +0.2 4,392,445 + HP15_4156 0.43 +0.5 4,392,452 + HP15_4156 0.44 +0.9 4,392,453 + HP15_4156 0.44 -1.5 4,392,475 + HP15_4156 0.46 +0.9 4,392,480 - HP15_4156 0.47 -0.2 4,392,518 + HP15_4156 0.51 +0.4 4,392,548 + HP15_4156 0.55 +0.6 4,392,595 + HP15_4156 0.60 -1.3 4,392,601 - HP15_4156 0.61 +0.0 4,392,659 - HP15_4156 0.68 +0.8 4,392,684 - HP15_4156 0.71 -0.4 4,392,745 + HP15_4156 0.78 +0.7 4,392,745 + HP15_4156 0.78 -0.1 4,392,817 - HP15_4156 0.86 +1.8 4,392,827 + HP15_4156 0.87 -1.4 4,392,893 + +0.1 4,392,916 + -1.3 4,392,916 + -0.6 4,392,921 + +0.5 4,392,924 - +0.0 4,392,924 - -0.8 4,392,926 + +0.2
Or see this region's nucleotide sequence