Experiment: Control growth in Pro99_seawater
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_4037 and HP15_4038 are separated by 9 nucleotides HP15_4038 and HP15_4039 are separated by 147 nucleotides HP15_4039 and HP15_4040 are separated by 46 nucleotides HP15_4040 and HP15_4041 overlap by 4 nucleotides
HP15_4037: HP15_4037 - hydratase/decarboxylase, at 4,273,522 to 4,274,316
_4037
HP15_4038: HP15_4038 - 4-oxalocrotonate tautomerase, at 4,274,326 to 4,274,517
_4038
HP15_4039: HP15_4039 - conserved hypothetical protein, at 4,274,665 to 4,275,264
_4039
HP15_4040: HP15_4040 - ketopantoate reductase ApbA/PanE, at 4,275,311 to 4,276,234
_4040
HP15_4041: HP15_4041 - OmpA/MotB domain protein, at 4,276,231 to 4,277,256
_4041
Position (kb) 4275
4276
4277 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 4274.503 kb on + strand at 4274.505 kb on + strand at 4274.637 kb on - strand at 4274.701 kb on - strand at 4274.806 kb on - strand, within HP15_4039 at 4274.817 kb on - strand, within HP15_4039 at 4274.930 kb on + strand, within HP15_4039 at 4274.938 kb on - strand, within HP15_4039 at 4274.938 kb on - strand, within HP15_4039 at 4274.938 kb on - strand, within HP15_4039 at 4274.954 kb on + strand, within HP15_4039 at 4275.075 kb on + strand, within HP15_4039 at 4275.118 kb on + strand, within HP15_4039 at 4275.131 kb on - strand, within HP15_4039 at 4275.140 kb on + strand, within HP15_4039 at 4275.140 kb on + strand, within HP15_4039 at 4275.148 kb on - strand, within HP15_4039 at 4275.148 kb on - strand, within HP15_4039 at 4275.210 kb on - strand at 4275.217 kb on - strand at 4275.390 kb on - strand at 4275.404 kb on + strand, within HP15_4040 at 4275.413 kb on - strand, within HP15_4040 at 4275.639 kb on + strand, within HP15_4040 at 4275.668 kb on + strand, within HP15_4040 at 4275.668 kb on + strand, within HP15_4040 at 4275.671 kb on - strand, within HP15_4040 at 4275.707 kb on - strand, within HP15_4040 at 4275.717 kb on + strand, within HP15_4040 at 4275.827 kb on - strand, within HP15_4040 at 4276.012 kb on + strand, within HP15_4040 at 4276.130 kb on - strand, within HP15_4040 at 4276.151 kb on + strand at 4276.192 kb on + strand at 4276.194 kb on + strand at 4276.195 kb on - strand at 4276.198 kb on + strand at 4276.200 kb on - strand at 4276.211 kb on + strand at 4276.211 kb on + strand at 4276.211 kb on + strand at 4276.219 kb on - strand at 4276.251 kb on + strand at 4276.309 kb on - strand at 4276.397 kb on - strand, within HP15_4041 at 4276.483 kb on - strand, within HP15_4041 at 4276.499 kb on + strand, within HP15_4041 at 4276.555 kb on - strand, within HP15_4041 at 4276.592 kb on - strand, within HP15_4041 at 4276.670 kb on + strand, within HP15_4041 at 4276.678 kb on - strand, within HP15_4041 at 4276.732 kb on - strand, within HP15_4041 at 4276.893 kb on + strand, within HP15_4041 at 4276.963 kb on + strand, within HP15_4041 at 4276.972 kb on - strand, within HP15_4041 at 4277.129 kb on + strand, within HP15_4041
Per-strain Table
Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater remove 4,274,503 + +0.3 4,274,505 + -1.8 4,274,637 - +0.2 4,274,701 - +1.1 4,274,806 - HP15_4039 0.23 -0.1 4,274,817 - HP15_4039 0.25 -2.1 4,274,930 + HP15_4039 0.44 +0.3 4,274,938 - HP15_4039 0.46 +0.3 4,274,938 - HP15_4039 0.46 -0.6 4,274,938 - HP15_4039 0.46 -2.4 4,274,954 + HP15_4039 0.48 +0.2 4,275,075 + HP15_4039 0.68 -1.4 4,275,118 + HP15_4039 0.76 +0.3 4,275,131 - HP15_4039 0.78 -0.2 4,275,140 + HP15_4039 0.79 -1.3 4,275,140 + HP15_4039 0.79 +0.2 4,275,148 - HP15_4039 0.81 +0.2 4,275,148 - HP15_4039 0.81 -3.8 4,275,210 - +0.6 4,275,217 - +0.7 4,275,390 - -1.1 4,275,404 + HP15_4040 0.10 +0.3 4,275,413 - HP15_4040 0.11 +1.0 4,275,639 + HP15_4040 0.35 +0.0 4,275,668 + HP15_4040 0.39 +0.2 4,275,668 + HP15_4040 0.39 -0.0 4,275,671 - HP15_4040 0.39 -2.9 4,275,707 - HP15_4040 0.43 +0.7 4,275,717 + HP15_4040 0.44 +0.2 4,275,827 - HP15_4040 0.56 -2.1 4,276,012 + HP15_4040 0.76 +0.6 4,276,130 - HP15_4040 0.89 -1.4 4,276,151 + +0.3 4,276,192 + +0.8 4,276,194 + +0.3 4,276,195 - -0.1 4,276,198 + +0.3 4,276,200 - -2.8 4,276,211 + +0.6 4,276,211 + -2.7 4,276,211 + -3.0 4,276,219 - +1.2 4,276,251 + +0.2 4,276,309 - -0.0 4,276,397 - HP15_4041 0.16 -3.7 4,276,483 - HP15_4041 0.25 -0.3 4,276,499 + HP15_4041 0.26 -0.9 4,276,555 - HP15_4041 0.32 -0.3 4,276,592 - HP15_4041 0.35 -2.5 4,276,670 + HP15_4041 0.43 -0.6 4,276,678 - HP15_4041 0.44 +1.0 4,276,732 - HP15_4041 0.49 -2.5 4,276,893 + HP15_4041 0.65 -0.6 4,276,963 + HP15_4041 0.71 -0.1 4,276,972 - HP15_4041 0.72 -3.5 4,277,129 + HP15_4041 0.88 +0.2
Or see this region's nucleotide sequence