Experiment: Control growth in Pro99_seawater
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3918 and HP15_3919 overlap by 4 nucleotides HP15_3919 and HP15_3920 overlap by 2 nucleotides HP15_3920 and HP15_3921 are separated by 0 nucleotides HP15_3921 and HP15_3922 are separated by 434 nucleotides HP15_3922 and HP15_3923 are separated by 57 nucleotides
HP15_3918: HP15_3918 - trap-type mannitol/chloroaromatic compound transport system, large permease component, at 4,147,935 to 4,149,245
_3918
HP15_3919: HP15_3919 - tripartite ATP-independent periplasmic transporter, DctQ component, at 4,149,242 to 4,149,766
_3919
HP15_3920: HP15_3920 - hypothetical protein, at 4,149,765 to 4,149,875
_3920
HP15_3921: HP15_3921 - extracellular solute-binding protein, family 7, bacteria, at 4,149,876 to 4,150,922
_3921
HP15_3922: HP15_3922 - protein containing phenylacetic acid degradation-related protein domain, at 4,151,357 to 4,151,797
_3922
HP15_3923: HP15_3923 - acyl-CoA dehydrogenase family protein, at 4,151,855 to 4,153,057
_3923
Position (kb)
4149
4150
4151 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4148.917 kb on + strand, within HP15_3918 at 4148.941 kb on - strand, within HP15_3918 at 4148.941 kb on - strand, within HP15_3918 at 4149.006 kb on + strand, within HP15_3918 at 4149.006 kb on + strand, within HP15_3918 at 4149.006 kb on + strand, within HP15_3918 at 4149.021 kb on + strand, within HP15_3918 at 4149.029 kb on - strand, within HP15_3918 at 4149.050 kb on + strand, within HP15_3918 at 4149.058 kb on - strand, within HP15_3918 at 4149.073 kb on - strand, within HP15_3918 at 4149.073 kb on - strand, within HP15_3918 at 4149.073 kb on - strand, within HP15_3918 at 4149.083 kb on - strand, within HP15_3918 at 4149.225 kb on + strand at 4149.225 kb on + strand at 4149.263 kb on - strand at 4149.312 kb on + strand, within HP15_3919 at 4149.381 kb on + strand, within HP15_3919 at 4149.414 kb on - strand, within HP15_3919 at 4149.506 kb on + strand, within HP15_3919 at 4149.506 kb on + strand, within HP15_3919 at 4149.514 kb on - strand, within HP15_3919 at 4149.514 kb on - strand, within HP15_3919 at 4149.514 kb on - strand, within HP15_3919 at 4149.514 kb on - strand, within HP15_3919 at 4149.514 kb on - strand, within HP15_3919 at 4149.514 kb on - strand, within HP15_3919 at 4149.543 kb on - strand, within HP15_3919 at 4149.566 kb on + strand, within HP15_3919 at 4149.639 kb on + strand, within HP15_3919 at 4149.646 kb on - strand, within HP15_3919 at 4149.686 kb on - strand, within HP15_3919 at 4149.718 kb on - strand at 4149.718 kb on - strand at 4149.718 kb on - strand at 4149.726 kb on - strand at 4149.759 kb on - strand at 4149.759 kb on - strand at 4149.866 kb on - strand at 4149.866 kb on - strand at 4149.874 kb on + strand at 4149.877 kb on - strand at 4149.882 kb on - strand at 4149.990 kb on + strand, within HP15_3921 at 4150.012 kb on + strand, within HP15_3921 at 4150.012 kb on + strand, within HP15_3921 at 4150.020 kb on - strand, within HP15_3921 at 4150.050 kb on - strand, within HP15_3921 at 4150.060 kb on - strand, within HP15_3921 at 4150.064 kb on + strand, within HP15_3921 at 4150.149 kb on + strand, within HP15_3921 at 4150.149 kb on + strand, within HP15_3921 at 4150.157 kb on - strand, within HP15_3921 at 4150.163 kb on + strand, within HP15_3921 at 4150.164 kb on - strand, within HP15_3921 at 4150.165 kb on - strand, within HP15_3921 at 4150.194 kb on + strand, within HP15_3921 at 4150.235 kb on + strand, within HP15_3921 at 4150.243 kb on - strand, within HP15_3921 at 4150.272 kb on - strand, within HP15_3921 at 4150.293 kb on + strand, within HP15_3921 at 4150.293 kb on + strand, within HP15_3921 at 4150.293 kb on + strand, within HP15_3921 at 4150.301 kb on - strand, within HP15_3921 at 4150.301 kb on - strand, within HP15_3921 at 4150.301 kb on - strand, within HP15_3921 at 4150.301 kb on - strand, within HP15_3921 at 4150.348 kb on - strand, within HP15_3921 at 4150.444 kb on + strand, within HP15_3921 at 4150.566 kb on - strand, within HP15_3921 at 4150.569 kb on + strand, within HP15_3921 at 4150.602 kb on - strand, within HP15_3921 at 4150.602 kb on - strand, within HP15_3921 at 4150.607 kb on - strand, within HP15_3921 at 4150.680 kb on - strand, within HP15_3921 at 4150.680 kb on - strand, within HP15_3921 at 4150.680 kb on - strand, within HP15_3921 at 4150.751 kb on + strand, within HP15_3921 at 4150.759 kb on - strand, within HP15_3921 at 4150.765 kb on + strand, within HP15_3921 at 4150.833 kb on + strand at 4150.878 kb on + strand at 4150.886 kb on - strand at 4150.906 kb on + strand at 4151.106 kb on + strand at 4151.117 kb on - strand at 4151.149 kb on - strand at 4151.340 kb on + strand at 4151.463 kb on + strand, within HP15_3922 at 4151.463 kb on + strand, within HP15_3922 at 4151.482 kb on - strand, within HP15_3922 at 4151.516 kb on + strand, within HP15_3922 at 4151.524 kb on - strand, within HP15_3922 at 4151.526 kb on - strand, within HP15_3922 at 4151.686 kb on + strand, within HP15_3922 at 4151.692 kb on - strand, within HP15_3922 at 4151.694 kb on + strand, within HP15_3922 at 4151.708 kb on + strand, within HP15_3922 at 4151.786 kb on + strand at 4151.874 kb on + strand at 4151.874 kb on - strand at 4151.915 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater remove 4,148,917 + HP15_3918 0.75 -0.2 4,148,941 - HP15_3918 0.77 +0.6 4,148,941 - HP15_3918 0.77 -0.0 4,149,006 + HP15_3918 0.82 -2.0 4,149,006 + HP15_3918 0.82 -0.3 4,149,006 + HP15_3918 0.82 +1.5 4,149,021 + HP15_3918 0.83 +0.2 4,149,029 - HP15_3918 0.83 -0.5 4,149,050 + HP15_3918 0.85 -1.0 4,149,058 - HP15_3918 0.86 -0.5 4,149,073 - HP15_3918 0.87 +0.1 4,149,073 - HP15_3918 0.87 -1.1 4,149,073 - HP15_3918 0.87 +1.1 4,149,083 - HP15_3918 0.88 -0.1 4,149,225 + -2.6 4,149,225 + +1.1 4,149,263 - -0.1 4,149,312 + HP15_3919 0.13 +0.9 4,149,381 + HP15_3919 0.26 -2.5 4,149,414 - HP15_3919 0.33 -2.0 4,149,506 + HP15_3919 0.50 +0.3 4,149,506 + HP15_3919 0.50 +0.7 4,149,514 - HP15_3919 0.52 +0.2 4,149,514 - HP15_3919 0.52 +0.2 4,149,514 - HP15_3919 0.52 +1.7 4,149,514 - HP15_3919 0.52 +0.4 4,149,514 - HP15_3919 0.52 -0.3 4,149,514 - HP15_3919 0.52 +0.7 4,149,543 - HP15_3919 0.57 -1.8 4,149,566 + HP15_3919 0.62 +0.4 4,149,639 + HP15_3919 0.76 +0.7 4,149,646 - HP15_3919 0.77 +0.9 4,149,686 - HP15_3919 0.85 +0.6 4,149,718 - +0.6 4,149,718 - -0.2 4,149,718 - +0.6 4,149,726 - +0.0 4,149,759 - -2.8 4,149,759 - -0.1 4,149,866 - +1.6 4,149,866 - +0.2 4,149,874 + -2.1 4,149,877 - -0.3 4,149,882 - +0.3 4,149,990 + HP15_3921 0.11 -0.7 4,150,012 + HP15_3921 0.13 +0.1 4,150,012 + HP15_3921 0.13 +0.2 4,150,020 - HP15_3921 0.14 -0.2 4,150,050 - HP15_3921 0.17 +0.5 4,150,060 - HP15_3921 0.18 -0.4 4,150,064 + HP15_3921 0.18 -1.3 4,150,149 + HP15_3921 0.26 +0.0 4,150,149 + HP15_3921 0.26 +0.1 4,150,157 - HP15_3921 0.27 -3.2 4,150,163 + HP15_3921 0.27 +0.6 4,150,164 - HP15_3921 0.28 +0.2 4,150,165 - HP15_3921 0.28 +0.5 4,150,194 + HP15_3921 0.30 -0.6 4,150,235 + HP15_3921 0.34 -0.1 4,150,243 - HP15_3921 0.35 -0.6 4,150,272 - HP15_3921 0.38 -0.4 4,150,293 + HP15_3921 0.40 -0.3 4,150,293 + HP15_3921 0.40 +0.4 4,150,293 + HP15_3921 0.40 -1.3 4,150,301 - HP15_3921 0.41 +0.5 4,150,301 - HP15_3921 0.41 +0.3 4,150,301 - HP15_3921 0.41 +0.1 4,150,301 - HP15_3921 0.41 +0.5 4,150,348 - HP15_3921 0.45 -0.4 4,150,444 + HP15_3921 0.54 -0.6 4,150,566 - HP15_3921 0.66 +0.3 4,150,569 + HP15_3921 0.66 +0.8 4,150,602 - HP15_3921 0.69 +1.1 4,150,602 - HP15_3921 0.69 -1.3 4,150,607 - HP15_3921 0.70 +0.9 4,150,680 - HP15_3921 0.77 +0.1 4,150,680 - HP15_3921 0.77 -0.5 4,150,680 - HP15_3921 0.77 +0.3 4,150,751 + HP15_3921 0.84 +0.3 4,150,759 - HP15_3921 0.84 +0.9 4,150,765 + HP15_3921 0.85 +1.0 4,150,833 + +0.1 4,150,878 + +0.1 4,150,886 - +0.8 4,150,906 + -0.0 4,151,106 + +0.3 4,151,117 - +0.4 4,151,149 - +0.1 4,151,340 + -0.0 4,151,463 + HP15_3922 0.24 -0.1 4,151,463 + HP15_3922 0.24 +0.5 4,151,482 - HP15_3922 0.28 -2.2 4,151,516 + HP15_3922 0.36 +0.2 4,151,524 - HP15_3922 0.38 -1.4 4,151,526 - HP15_3922 0.38 +1.0 4,151,686 + HP15_3922 0.75 -2.6 4,151,692 - HP15_3922 0.76 -0.7 4,151,694 + HP15_3922 0.76 +0.1 4,151,708 + HP15_3922 0.80 -3.7 4,151,786 + -0.6 4,151,874 + -0.0 4,151,874 - -1.2 4,151,915 + -1.4
Or see this region's nucleotide sequence