Strain Fitness in Marinobacter adhaerens HP15 around HP15_3921

Experiment: Control growth in Pro99_seawater

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3918 and HP15_3919 overlap by 4 nucleotidesHP15_3919 and HP15_3920 overlap by 2 nucleotidesHP15_3920 and HP15_3921 are separated by 0 nucleotidesHP15_3921 and HP15_3922 are separated by 434 nucleotidesHP15_3922 and HP15_3923 are separated by 57 nucleotides HP15_3918: HP15_3918 - trap-type mannitol/chloroaromatic compound transport system, large permease component, at 4,147,935 to 4,149,245 _3918 HP15_3919: HP15_3919 - tripartite ATP-independent periplasmic transporter, DctQ component, at 4,149,242 to 4,149,766 _3919 HP15_3920: HP15_3920 - hypothetical protein, at 4,149,765 to 4,149,875 _3920 HP15_3921: HP15_3921 - extracellular solute-binding protein, family 7, bacteria, at 4,149,876 to 4,150,922 _3921 HP15_3922: HP15_3922 - protein containing phenylacetic acid degradation-related protein domain, at 4,151,357 to 4,151,797 _3922 HP15_3923: HP15_3923 - acyl-CoA dehydrogenase family protein, at 4,151,855 to 4,153,057 _3923 Position (kb) 4149 4150 4151Strain fitness (log2 ratio) -3 -2 -1 0 1at 4148.917 kb on + strand, within HP15_3918at 4148.941 kb on - strand, within HP15_3918at 4148.941 kb on - strand, within HP15_3918at 4149.006 kb on + strand, within HP15_3918at 4149.006 kb on + strand, within HP15_3918at 4149.006 kb on + strand, within HP15_3918at 4149.021 kb on + strand, within HP15_3918at 4149.029 kb on - strand, within HP15_3918at 4149.050 kb on + strand, within HP15_3918at 4149.058 kb on - strand, within HP15_3918at 4149.073 kb on - strand, within HP15_3918at 4149.073 kb on - strand, within HP15_3918at 4149.073 kb on - strand, within HP15_3918at 4149.083 kb on - strand, within HP15_3918at 4149.225 kb on + strandat 4149.225 kb on + strandat 4149.263 kb on - strandat 4149.312 kb on + strand, within HP15_3919at 4149.381 kb on + strand, within HP15_3919at 4149.414 kb on - strand, within HP15_3919at 4149.506 kb on + strand, within HP15_3919at 4149.506 kb on + strand, within HP15_3919at 4149.514 kb on - strand, within HP15_3919at 4149.514 kb on - strand, within HP15_3919at 4149.514 kb on - strand, within HP15_3919at 4149.514 kb on - strand, within HP15_3919at 4149.514 kb on - strand, within HP15_3919at 4149.514 kb on - strand, within HP15_3919at 4149.543 kb on - strand, within HP15_3919at 4149.566 kb on + strand, within HP15_3919at 4149.639 kb on + strand, within HP15_3919at 4149.646 kb on - strand, within HP15_3919at 4149.686 kb on - strand, within HP15_3919at 4149.718 kb on - strandat 4149.718 kb on - strandat 4149.718 kb on - strandat 4149.726 kb on - strandat 4149.759 kb on - strandat 4149.759 kb on - strandat 4149.866 kb on - strandat 4149.866 kb on - strandat 4149.874 kb on + strandat 4149.877 kb on - strandat 4149.882 kb on - strandat 4149.990 kb on + strand, within HP15_3921at 4150.012 kb on + strand, within HP15_3921at 4150.012 kb on + strand, within HP15_3921at 4150.020 kb on - strand, within HP15_3921at 4150.050 kb on - strand, within HP15_3921at 4150.060 kb on - strand, within HP15_3921at 4150.064 kb on + strand, within HP15_3921at 4150.149 kb on + strand, within HP15_3921at 4150.149 kb on + strand, within HP15_3921at 4150.157 kb on - strand, within HP15_3921at 4150.163 kb on + strand, within HP15_3921at 4150.164 kb on - strand, within HP15_3921at 4150.165 kb on - strand, within HP15_3921at 4150.194 kb on + strand, within HP15_3921at 4150.235 kb on + strand, within HP15_3921at 4150.243 kb on - strand, within HP15_3921at 4150.272 kb on - strand, within HP15_3921at 4150.293 kb on + strand, within HP15_3921at 4150.293 kb on + strand, within HP15_3921at 4150.293 kb on + strand, within HP15_3921at 4150.301 kb on - strand, within HP15_3921at 4150.301 kb on - strand, within HP15_3921at 4150.301 kb on - strand, within HP15_3921at 4150.301 kb on - strand, within HP15_3921at 4150.348 kb on - strand, within HP15_3921at 4150.444 kb on + strand, within HP15_3921at 4150.566 kb on - strand, within HP15_3921at 4150.569 kb on + strand, within HP15_3921at 4150.602 kb on - strand, within HP15_3921at 4150.602 kb on - strand, within HP15_3921at 4150.607 kb on - strand, within HP15_3921at 4150.680 kb on - strand, within HP15_3921at 4150.680 kb on - strand, within HP15_3921at 4150.680 kb on - strand, within HP15_3921at 4150.751 kb on + strand, within HP15_3921at 4150.759 kb on - strand, within HP15_3921at 4150.765 kb on + strand, within HP15_3921at 4150.833 kb on + strandat 4150.878 kb on + strandat 4150.886 kb on - strandat 4150.906 kb on + strandat 4151.106 kb on + strandat 4151.117 kb on - strandat 4151.149 kb on - strandat 4151.340 kb on + strandat 4151.463 kb on + strand, within HP15_3922at 4151.463 kb on + strand, within HP15_3922at 4151.482 kb on - strand, within HP15_3922at 4151.516 kb on + strand, within HP15_3922at 4151.524 kb on - strand, within HP15_3922at 4151.526 kb on - strand, within HP15_3922at 4151.686 kb on + strand, within HP15_3922at 4151.692 kb on - strand, within HP15_3922at 4151.694 kb on + strand, within HP15_3922at 4151.708 kb on + strand, within HP15_3922at 4151.786 kb on + strandat 4151.874 kb on + strandat 4151.874 kb on - strandat 4151.915 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater
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4,148,917 + HP15_3918 0.75 -0.2
4,148,941 - HP15_3918 0.77 +0.6
4,148,941 - HP15_3918 0.77 -0.0
4,149,006 + HP15_3918 0.82 -2.0
4,149,006 + HP15_3918 0.82 -0.3
4,149,006 + HP15_3918 0.82 +1.5
4,149,021 + HP15_3918 0.83 +0.2
4,149,029 - HP15_3918 0.83 -0.5
4,149,050 + HP15_3918 0.85 -1.0
4,149,058 - HP15_3918 0.86 -0.5
4,149,073 - HP15_3918 0.87 +0.1
4,149,073 - HP15_3918 0.87 -1.1
4,149,073 - HP15_3918 0.87 +1.1
4,149,083 - HP15_3918 0.88 -0.1
4,149,225 + -2.6
4,149,225 + +1.1
4,149,263 - -0.1
4,149,312 + HP15_3919 0.13 +0.9
4,149,381 + HP15_3919 0.26 -2.5
4,149,414 - HP15_3919 0.33 -2.0
4,149,506 + HP15_3919 0.50 +0.3
4,149,506 + HP15_3919 0.50 +0.7
4,149,514 - HP15_3919 0.52 +0.2
4,149,514 - HP15_3919 0.52 +0.2
4,149,514 - HP15_3919 0.52 +1.7
4,149,514 - HP15_3919 0.52 +0.4
4,149,514 - HP15_3919 0.52 -0.3
4,149,514 - HP15_3919 0.52 +0.7
4,149,543 - HP15_3919 0.57 -1.8
4,149,566 + HP15_3919 0.62 +0.4
4,149,639 + HP15_3919 0.76 +0.7
4,149,646 - HP15_3919 0.77 +0.9
4,149,686 - HP15_3919 0.85 +0.6
4,149,718 - +0.6
4,149,718 - -0.2
4,149,718 - +0.6
4,149,726 - +0.0
4,149,759 - -2.8
4,149,759 - -0.1
4,149,866 - +1.6
4,149,866 - +0.2
4,149,874 + -2.1
4,149,877 - -0.3
4,149,882 - +0.3
4,149,990 + HP15_3921 0.11 -0.7
4,150,012 + HP15_3921 0.13 +0.1
4,150,012 + HP15_3921 0.13 +0.2
4,150,020 - HP15_3921 0.14 -0.2
4,150,050 - HP15_3921 0.17 +0.5
4,150,060 - HP15_3921 0.18 -0.4
4,150,064 + HP15_3921 0.18 -1.3
4,150,149 + HP15_3921 0.26 +0.0
4,150,149 + HP15_3921 0.26 +0.1
4,150,157 - HP15_3921 0.27 -3.2
4,150,163 + HP15_3921 0.27 +0.6
4,150,164 - HP15_3921 0.28 +0.2
4,150,165 - HP15_3921 0.28 +0.5
4,150,194 + HP15_3921 0.30 -0.6
4,150,235 + HP15_3921 0.34 -0.1
4,150,243 - HP15_3921 0.35 -0.6
4,150,272 - HP15_3921 0.38 -0.4
4,150,293 + HP15_3921 0.40 -0.3
4,150,293 + HP15_3921 0.40 +0.4
4,150,293 + HP15_3921 0.40 -1.3
4,150,301 - HP15_3921 0.41 +0.5
4,150,301 - HP15_3921 0.41 +0.3
4,150,301 - HP15_3921 0.41 +0.1
4,150,301 - HP15_3921 0.41 +0.5
4,150,348 - HP15_3921 0.45 -0.4
4,150,444 + HP15_3921 0.54 -0.6
4,150,566 - HP15_3921 0.66 +0.3
4,150,569 + HP15_3921 0.66 +0.8
4,150,602 - HP15_3921 0.69 +1.1
4,150,602 - HP15_3921 0.69 -1.3
4,150,607 - HP15_3921 0.70 +0.9
4,150,680 - HP15_3921 0.77 +0.1
4,150,680 - HP15_3921 0.77 -0.5
4,150,680 - HP15_3921 0.77 +0.3
4,150,751 + HP15_3921 0.84 +0.3
4,150,759 - HP15_3921 0.84 +0.9
4,150,765 + HP15_3921 0.85 +1.0
4,150,833 + +0.1
4,150,878 + +0.1
4,150,886 - +0.8
4,150,906 + -0.0
4,151,106 + +0.3
4,151,117 - +0.4
4,151,149 - +0.1
4,151,340 + -0.0
4,151,463 + HP15_3922 0.24 -0.1
4,151,463 + HP15_3922 0.24 +0.5
4,151,482 - HP15_3922 0.28 -2.2
4,151,516 + HP15_3922 0.36 +0.2
4,151,524 - HP15_3922 0.38 -1.4
4,151,526 - HP15_3922 0.38 +1.0
4,151,686 + HP15_3922 0.75 -2.6
4,151,692 - HP15_3922 0.76 -0.7
4,151,694 + HP15_3922 0.76 +0.1
4,151,708 + HP15_3922 0.80 -3.7
4,151,786 + -0.6
4,151,874 + -0.0
4,151,874 - -1.2
4,151,915 + -1.4

Or see this region's nucleotide sequence