Strain Fitness in Marinobacter adhaerens HP15 around HP15_3721

Experiment: Control growth in Pro99_seawater

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3720 and HP15_3721 overlap by 4 nucleotidesHP15_3721 and HP15_3722 are separated by 76 nucleotidesHP15_3722 and HP15_3723 are separated by 519 nucleotides HP15_3720: HP15_3720 - DNA damage response nuclease (from data), at 3,933,962 to 3,935,671 _3720 HP15_3721: HP15_3721 - Rad3-related DNA helicase, at 3,935,668 to 3,937,965 _3721 HP15_3722: HP15_3722 - hypothetical protein, at 3,938,042 to 3,938,428 _3722 HP15_3723: HP15_3723 - PTS system, glucose-specific EIIA/HPr/phosphoenolpyruvate-protein phosphotransferase components, at 3,938,948 to 3,941,884 _3723 Position (kb) 3935 3936 3937 3938Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3934.670 kb on + strand, within HP15_3720at 3934.673 kb on - strand, within HP15_3720at 3934.881 kb on - strand, within HP15_3720at 3934.920 kb on + strand, within HP15_3720at 3934.920 kb on + strand, within HP15_3720at 3934.943 kb on + strand, within HP15_3720at 3935.039 kb on - strand, within HP15_3720at 3935.055 kb on - strand, within HP15_3720at 3935.055 kb on - strand, within HP15_3720at 3935.060 kb on - strand, within HP15_3720at 3935.081 kb on + strand, within HP15_3720at 3935.132 kb on + strand, within HP15_3720at 3935.236 kb on - strand, within HP15_3720at 3935.236 kb on - strand, within HP15_3720at 3935.243 kb on + strand, within HP15_3720at 3935.280 kb on + strand, within HP15_3720at 3935.339 kb on + strand, within HP15_3720at 3935.339 kb on + strand, within HP15_3720at 3935.349 kb on + strand, within HP15_3720at 3935.349 kb on + strand, within HP15_3720at 3935.349 kb on + strand, within HP15_3720at 3935.349 kb on + strand, within HP15_3720at 3935.349 kb on + strand, within HP15_3720at 3935.397 kb on + strand, within HP15_3720at 3935.402 kb on + strand, within HP15_3720at 3935.402 kb on + strand, within HP15_3720at 3935.410 kb on - strand, within HP15_3720at 3935.410 kb on - strand, within HP15_3720at 3935.412 kb on + strand, within HP15_3720at 3935.463 kb on + strand, within HP15_3720at 3935.550 kb on - strandat 3935.556 kb on + strandat 3935.617 kb on - strandat 3935.713 kb on + strandat 3935.753 kb on + strandat 3935.761 kb on - strandat 3935.845 kb on + strandat 3935.918 kb on + strand, within HP15_3721at 3935.986 kb on + strand, within HP15_3721at 3935.989 kb on + strand, within HP15_3721at 3935.999 kb on - strand, within HP15_3721at 3936.025 kb on - strand, within HP15_3721at 3936.109 kb on + strand, within HP15_3721at 3936.143 kb on - strand, within HP15_3721at 3936.143 kb on - strand, within HP15_3721at 3936.143 kb on - strand, within HP15_3721at 3936.161 kb on + strand, within HP15_3721at 3936.171 kb on + strand, within HP15_3721at 3936.183 kb on + strand, within HP15_3721at 3936.183 kb on + strand, within HP15_3721at 3936.226 kb on - strand, within HP15_3721at 3936.293 kb on + strand, within HP15_3721at 3936.301 kb on - strand, within HP15_3721at 3936.311 kb on - strand, within HP15_3721at 3936.369 kb on + strand, within HP15_3721at 3936.429 kb on + strand, within HP15_3721at 3936.450 kb on + strand, within HP15_3721at 3936.453 kb on - strand, within HP15_3721at 3936.453 kb on - strand, within HP15_3721at 3936.458 kb on - strand, within HP15_3721at 3936.458 kb on - strand, within HP15_3721at 3936.458 kb on - strand, within HP15_3721at 3936.475 kb on - strand, within HP15_3721at 3936.761 kb on + strand, within HP15_3721at 3936.761 kb on + strand, within HP15_3721at 3936.785 kb on + strand, within HP15_3721at 3936.798 kb on + strand, within HP15_3721at 3936.946 kb on + strand, within HP15_3721at 3936.954 kb on - strand, within HP15_3721at 3937.118 kb on + strand, within HP15_3721at 3937.155 kb on - strand, within HP15_3721at 3937.246 kb on + strand, within HP15_3721at 3937.309 kb on + strand, within HP15_3721at 3937.350 kb on + strand, within HP15_3721at 3937.398 kb on - strand, within HP15_3721at 3937.563 kb on - strand, within HP15_3721at 3937.594 kb on + strand, within HP15_3721at 3937.611 kb on - strand, within HP15_3721at 3937.618 kb on + strand, within HP15_3721at 3937.622 kb on + strand, within HP15_3721at 3937.625 kb on - strand, within HP15_3721at 3937.695 kb on - strand, within HP15_3721at 3937.724 kb on + strand, within HP15_3721at 3937.765 kb on + strandat 3937.829 kb on + strandat 3937.928 kb on + strandat 3937.928 kb on - strandat 3938.020 kb on + strandat 3938.069 kb on - strandat 3938.174 kb on - strand, within HP15_3722at 3938.174 kb on - strand, within HP15_3722at 3938.195 kb on - strand, within HP15_3722at 3938.195 kb on - strand, within HP15_3722at 3938.253 kb on - strand, within HP15_3722at 3938.274 kb on + strand, within HP15_3722at 3938.282 kb on - strand, within HP15_3722at 3938.295 kb on - strand, within HP15_3722at 3938.322 kb on - strand, within HP15_3722at 3938.322 kb on - strand, within HP15_3722at 3938.398 kb on + strandat 3938.398 kb on + strandat 3938.424 kb on + strandat 3938.456 kb on - strandat 3938.657 kb on - strandat 3938.742 kb on + strandat 3938.750 kb on - strandat 3938.750 kb on - strandat 3938.822 kb on + strandat 3938.957 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater
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3,934,670 + HP15_3720 0.41 +0.4
3,934,673 - HP15_3720 0.42 +0.2
3,934,881 - HP15_3720 0.54 -1.6
3,934,920 + HP15_3720 0.56 -0.4
3,934,920 + HP15_3720 0.56 +0.1
3,934,943 + HP15_3720 0.57 -0.2
3,935,039 - HP15_3720 0.63 +0.5
3,935,055 - HP15_3720 0.64 +0.1
3,935,055 - HP15_3720 0.64 -0.6
3,935,060 - HP15_3720 0.64 -3.7
3,935,081 + HP15_3720 0.65 -2.7
3,935,132 + HP15_3720 0.68 +0.8
3,935,236 - HP15_3720 0.75 +0.1
3,935,236 - HP15_3720 0.75 +1.1
3,935,243 + HP15_3720 0.75 -3.2
3,935,280 + HP15_3720 0.77 +0.3
3,935,339 + HP15_3720 0.81 -0.2
3,935,339 + HP15_3720 0.81 +0.3
3,935,349 + HP15_3720 0.81 +0.4
3,935,349 + HP15_3720 0.81 +0.4
3,935,349 + HP15_3720 0.81 +0.1
3,935,349 + HP15_3720 0.81 +0.2
3,935,349 + HP15_3720 0.81 -0.2
3,935,397 + HP15_3720 0.84 -0.5
3,935,402 + HP15_3720 0.84 +0.6
3,935,402 + HP15_3720 0.84 -0.7
3,935,410 - HP15_3720 0.85 +0.2
3,935,410 - HP15_3720 0.85 +0.3
3,935,412 + HP15_3720 0.85 -0.4
3,935,463 + HP15_3720 0.88 +1.5
3,935,550 - +0.2
3,935,556 + +0.4
3,935,617 - -0.5
3,935,713 + -0.1
3,935,753 + +0.7
3,935,761 - -3.8
3,935,845 + -2.3
3,935,918 + HP15_3721 0.11 +0.4
3,935,986 + HP15_3721 0.14 +0.1
3,935,989 + HP15_3721 0.14 +0.9
3,935,999 - HP15_3721 0.14 +0.3
3,936,025 - HP15_3721 0.16 +1.0
3,936,109 + HP15_3721 0.19 +1.1
3,936,143 - HP15_3721 0.21 -0.5
3,936,143 - HP15_3721 0.21 -0.2
3,936,143 - HP15_3721 0.21 +0.5
3,936,161 + HP15_3721 0.21 +0.4
3,936,171 + HP15_3721 0.22 -0.2
3,936,183 + HP15_3721 0.22 +0.6
3,936,183 + HP15_3721 0.22 -2.6
3,936,226 - HP15_3721 0.24 +0.2
3,936,293 + HP15_3721 0.27 -2.4
3,936,301 - HP15_3721 0.28 -0.1
3,936,311 - HP15_3721 0.28 -2.1
3,936,369 + HP15_3721 0.31 +0.5
3,936,429 + HP15_3721 0.33 -0.2
3,936,450 + HP15_3721 0.34 -0.8
3,936,453 - HP15_3721 0.34 -0.1
3,936,453 - HP15_3721 0.34 -4.1
3,936,458 - HP15_3721 0.34 -3.0
3,936,458 - HP15_3721 0.34 -0.4
3,936,458 - HP15_3721 0.34 -2.9
3,936,475 - HP15_3721 0.35 -0.5
3,936,761 + HP15_3721 0.48 -0.8
3,936,761 + HP15_3721 0.48 +0.5
3,936,785 + HP15_3721 0.49 +0.2
3,936,798 + HP15_3721 0.49 -0.3
3,936,946 + HP15_3721 0.56 -2.2
3,936,954 - HP15_3721 0.56 -3.4
3,937,118 + HP15_3721 0.63 -0.1
3,937,155 - HP15_3721 0.65 +1.5
3,937,246 + HP15_3721 0.69 +0.6
3,937,309 + HP15_3721 0.71 -0.0
3,937,350 + HP15_3721 0.73 +0.3
3,937,398 - HP15_3721 0.75 -3.4
3,937,563 - HP15_3721 0.82 -2.7
3,937,594 + HP15_3721 0.84 -0.4
3,937,611 - HP15_3721 0.85 -0.4
3,937,618 + HP15_3721 0.85 +0.7
3,937,622 + HP15_3721 0.85 -2.1
3,937,625 - HP15_3721 0.85 +0.8
3,937,695 - HP15_3721 0.88 -3.6
3,937,724 + HP15_3721 0.89 -0.5
3,937,765 + -3.3
3,937,829 + -3.2
3,937,928 + +0.8
3,937,928 - -3.2
3,938,020 + -0.3
3,938,069 - +0.7
3,938,174 - HP15_3722 0.34 +0.4
3,938,174 - HP15_3722 0.34 -0.2
3,938,195 - HP15_3722 0.40 -0.1
3,938,195 - HP15_3722 0.40 -0.1
3,938,253 - HP15_3722 0.55 -2.1
3,938,274 + HP15_3722 0.60 -0.1
3,938,282 - HP15_3722 0.62 -0.1
3,938,295 - HP15_3722 0.65 -0.4
3,938,322 - HP15_3722 0.72 -0.3
3,938,322 - HP15_3722 0.72 +0.3
3,938,398 + -1.6
3,938,398 + -1.5
3,938,424 + -2.8
3,938,456 - +0.3
3,938,657 - +0.4
3,938,742 + -0.5
3,938,750 - -0.2
3,938,750 - -4.5
3,938,822 + +0.7
3,938,957 + +0.6

Or see this region's nucleotide sequence