Strain Fitness in Marinobacter adhaerens HP15 around HP15_3697

Experiment: Control growth in Pro99_seawater

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3696 and HP15_3697 are separated by 164 nucleotidesHP15_3697 and HP15_3698 are separated by 2 nucleotides HP15_3696: HP15_3696 - acyl-CoA dehydrogenase domain protein, at 3,898,168 to 3,900,237 _3696 HP15_3697: HP15_3697 - phytanoyl-CoA dioxygenase, at 3,900,402 to 3,901,337 _3697 HP15_3698: HP15_3698 - tRNA modification GTPase TrmE, at 3,901,340 to 3,902,746 _3698 Position (kb) 3900 3901 3902Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3899.457 kb on - strand, within HP15_3696at 3899.516 kb on - strand, within HP15_3696at 3899.516 kb on - strand, within HP15_3696at 3899.600 kb on + strand, within HP15_3696at 3899.707 kb on + strand, within HP15_3696at 3899.710 kb on - strand, within HP15_3696at 3899.732 kb on + strand, within HP15_3696at 3899.732 kb on + strand, within HP15_3696at 3899.830 kb on + strand, within HP15_3696at 3899.888 kb on + strand, within HP15_3696at 3899.891 kb on - strand, within HP15_3696at 3899.961 kb on + strand, within HP15_3696at 3900.025 kb on + strand, within HP15_3696at 3900.025 kb on + strand, within HP15_3696at 3900.034 kb on - strandat 3900.079 kb on + strandat 3900.097 kb on - strandat 3900.103 kb on - strandat 3900.155 kb on - strandat 3900.217 kb on + strandat 3900.251 kb on + strandat 3900.251 kb on + strandat 3900.251 kb on + strandat 3900.259 kb on - strandat 3900.415 kb on - strandat 3900.472 kb on + strandat 3900.472 kb on + strandat 3900.488 kb on - strandat 3900.508 kb on - strand, within HP15_3697at 3900.561 kb on - strand, within HP15_3697at 3900.592 kb on - strand, within HP15_3697at 3900.592 kb on - strand, within HP15_3697at 3900.758 kb on - strand, within HP15_3697at 3900.771 kb on + strand, within HP15_3697at 3900.794 kb on - strand, within HP15_3697at 3900.798 kb on - strand, within HP15_3697at 3900.798 kb on - strand, within HP15_3697at 3900.888 kb on + strand, within HP15_3697at 3900.979 kb on + strand, within HP15_3697at 3901.003 kb on + strand, within HP15_3697at 3901.044 kb on - strand, within HP15_3697at 3901.170 kb on + strand, within HP15_3697at 3901.238 kb on + strand, within HP15_3697at 3901.288 kb on - strandat 3901.309 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater
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3,899,457 - HP15_3696 0.62 +0.6
3,899,516 - HP15_3696 0.65 +0.1
3,899,516 - HP15_3696 0.65 +0.1
3,899,600 + HP15_3696 0.69 +1.0
3,899,707 + HP15_3696 0.74 -0.4
3,899,710 - HP15_3696 0.74 +0.2
3,899,732 + HP15_3696 0.76 -4.0
3,899,732 + HP15_3696 0.76 -0.1
3,899,830 + HP15_3696 0.80 -0.3
3,899,888 + HP15_3696 0.83 -3.7
3,899,891 - HP15_3696 0.83 -2.1
3,899,961 + HP15_3696 0.87 +0.4
3,900,025 + HP15_3696 0.90 -1.0
3,900,025 + HP15_3696 0.90 -0.3
3,900,034 - +0.1
3,900,079 + -2.3
3,900,097 - -0.7
3,900,103 - +0.2
3,900,155 - +0.5
3,900,217 + +0.2
3,900,251 + -0.2
3,900,251 + +0.1
3,900,251 + -2.7
3,900,259 - +0.4
3,900,415 - -3.8
3,900,472 + +0.2
3,900,472 + +2.1
3,900,488 - +1.8
3,900,508 - HP15_3697 0.11 +0.4
3,900,561 - HP15_3697 0.17 +1.0
3,900,592 - HP15_3697 0.20 +0.2
3,900,592 - HP15_3697 0.20 -1.1
3,900,758 - HP15_3697 0.38 +1.0
3,900,771 + HP15_3697 0.39 -2.5
3,900,794 - HP15_3697 0.42 +0.0
3,900,798 - HP15_3697 0.42 +0.4
3,900,798 - HP15_3697 0.42 -2.1
3,900,888 + HP15_3697 0.52 +0.5
3,900,979 + HP15_3697 0.62 +0.4
3,901,003 + HP15_3697 0.64 +0.1
3,901,044 - HP15_3697 0.69 +0.8
3,901,170 + HP15_3697 0.82 -3.5
3,901,238 + HP15_3697 0.89 +1.4
3,901,288 - -2.6
3,901,309 + +0.6

Or see this region's nucleotide sequence