Experiment: Control growth in Pro99_seawater
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3696 and HP15_3697 are separated by 164 nucleotides HP15_3697 and HP15_3698 are separated by 2 nucleotides
HP15_3696: HP15_3696 - acyl-CoA dehydrogenase domain protein, at 3,898,168 to 3,900,237
_3696
HP15_3697: HP15_3697 - phytanoyl-CoA dioxygenase, at 3,900,402 to 3,901,337
_3697
HP15_3698: HP15_3698 - tRNA modification GTPase TrmE, at 3,901,340 to 3,902,746
_3698
Position (kb)
3900
3901
3902 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3899.457 kb on - strand, within HP15_3696 at 3899.516 kb on - strand, within HP15_3696 at 3899.516 kb on - strand, within HP15_3696 at 3899.600 kb on + strand, within HP15_3696 at 3899.707 kb on + strand, within HP15_3696 at 3899.710 kb on - strand, within HP15_3696 at 3899.732 kb on + strand, within HP15_3696 at 3899.732 kb on + strand, within HP15_3696 at 3899.830 kb on + strand, within HP15_3696 at 3899.888 kb on + strand, within HP15_3696 at 3899.891 kb on - strand, within HP15_3696 at 3899.961 kb on + strand, within HP15_3696 at 3900.025 kb on + strand, within HP15_3696 at 3900.025 kb on + strand, within HP15_3696 at 3900.034 kb on - strand at 3900.079 kb on + strand at 3900.097 kb on - strand at 3900.103 kb on - strand at 3900.155 kb on - strand at 3900.217 kb on + strand at 3900.251 kb on + strand at 3900.251 kb on + strand at 3900.251 kb on + strand at 3900.259 kb on - strand at 3900.415 kb on - strand at 3900.472 kb on + strand at 3900.472 kb on + strand at 3900.488 kb on - strand at 3900.508 kb on - strand, within HP15_3697 at 3900.561 kb on - strand, within HP15_3697 at 3900.592 kb on - strand, within HP15_3697 at 3900.592 kb on - strand, within HP15_3697 at 3900.758 kb on - strand, within HP15_3697 at 3900.771 kb on + strand, within HP15_3697 at 3900.794 kb on - strand, within HP15_3697 at 3900.798 kb on - strand, within HP15_3697 at 3900.798 kb on - strand, within HP15_3697 at 3900.888 kb on + strand, within HP15_3697 at 3900.979 kb on + strand, within HP15_3697 at 3901.003 kb on + strand, within HP15_3697 at 3901.044 kb on - strand, within HP15_3697 at 3901.170 kb on + strand, within HP15_3697 at 3901.238 kb on + strand, within HP15_3697 at 3901.288 kb on - strand at 3901.309 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater remove 3,899,457 - HP15_3696 0.62 +0.6 3,899,516 - HP15_3696 0.65 +0.1 3,899,516 - HP15_3696 0.65 +0.1 3,899,600 + HP15_3696 0.69 +1.0 3,899,707 + HP15_3696 0.74 -0.4 3,899,710 - HP15_3696 0.74 +0.2 3,899,732 + HP15_3696 0.76 -4.0 3,899,732 + HP15_3696 0.76 -0.1 3,899,830 + HP15_3696 0.80 -0.3 3,899,888 + HP15_3696 0.83 -3.7 3,899,891 - HP15_3696 0.83 -2.1 3,899,961 + HP15_3696 0.87 +0.4 3,900,025 + HP15_3696 0.90 -1.0 3,900,025 + HP15_3696 0.90 -0.3 3,900,034 - +0.1 3,900,079 + -2.3 3,900,097 - -0.7 3,900,103 - +0.2 3,900,155 - +0.5 3,900,217 + +0.2 3,900,251 + -0.2 3,900,251 + +0.1 3,900,251 + -2.7 3,900,259 - +0.4 3,900,415 - -3.8 3,900,472 + +0.2 3,900,472 + +2.1 3,900,488 - +1.8 3,900,508 - HP15_3697 0.11 +0.4 3,900,561 - HP15_3697 0.17 +1.0 3,900,592 - HP15_3697 0.20 +0.2 3,900,592 - HP15_3697 0.20 -1.1 3,900,758 - HP15_3697 0.38 +1.0 3,900,771 + HP15_3697 0.39 -2.5 3,900,794 - HP15_3697 0.42 +0.0 3,900,798 - HP15_3697 0.42 +0.4 3,900,798 - HP15_3697 0.42 -2.1 3,900,888 + HP15_3697 0.52 +0.5 3,900,979 + HP15_3697 0.62 +0.4 3,901,003 + HP15_3697 0.64 +0.1 3,901,044 - HP15_3697 0.69 +0.8 3,901,170 + HP15_3697 0.82 -3.5 3,901,238 + HP15_3697 0.89 +1.4 3,901,288 - -2.6 3,901,309 + +0.6
Or see this region's nucleotide sequence